BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942140
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25620.2 | Symbols: YUC6 | Flavin-binding monooxygenase fami... 2121 0.0
AT5G43890.1 | Symbols: YUC5, SUPER1 | Flavin-binding monooxygen... 63.9 4e-09
> AT5G25620.2 | Symbols: YUC6 | Flavin-binding monooxygenase family
protein | chr5:8935040-8938758 REVERSE LENGTH=2111
Length=2111
Score = 2121 bits (1148), Expect = 0.0
Identities = 1224/1261 (97%), Gaps = 4/1261 (0%)
Strand=Plus/Plus
Query 1 AAGAAGAAGTTATTTTCTTGATGGATTTCTGTTGGAAGAGAGAGATGGAAGGTAAACTAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AAGAAGAAGTTATTTTCTTGATGGATTTCTGTTGGAAGAGAGAGATGGAAGGTAAACTAG 574
Query 61 CACATGACCACCGCGGCATGACGTCACCGCGTCGTATATGCGTCGTGACCGGTCCGGTGA 120
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 575 CACATGACCACCGCGGCATGACGTCACCGCGTCGTATCTGCGTCGTCACCGGTCCGGTGA 634
Query 121 TCGTAGGCTCCGGACCGTCGGGACTAGCCACGGCCGCATGTTTAAAAGAGAGAGGTATCA 180
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 635 TCGTAGGCGCCGGACCGTCGGGACTAGCCACGGCAGCATGTTTAAAAGAGAGAGGTATCA 694
Query 181 CGTCCGTACTACTAGAGAGATCAAACTGTATAGCCTCACTATGGCAGCTCAAGACTTATG 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 695 CGTCCGTACTACTAGAGAGATCAAACTGTATAGCATCACTATGGCAGCTCAAGACTTATG 754
Query 241 ACCGTCTTCATCTTCACCTTCCTAAACAATTCTGTGAACTTCCGATTTTACCCTTCCCCG 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 755 ACCGTCTTCATCTTCACCTTCCTAAACAATTCTGTGAACTTCCGATTATACCCTTCCCCG 814
Query 301 CCGATTTCCCTACCTACCCGACGAAGCAACAGTTCATCGAGTACCTTGAGGACTATGCTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 815 GAGATTTCCCTACCTACCCGACGAAGCAACAGTTCATCGAGTACCTTGAGGACTACGCTC 874
Query 361 GGAGGTTCGACATAAAGCCGGAGTTTAACCAGACGGTTGAGTCGGCTGAGTTTGATGAAA 420
||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 875 GGAGGTTTGACATAAAGCCGGAGTTTAACCAAACGGTTGAGTCGGCTGCGTTTGATGAAA 934
Query 421 ACCTTGGGATGTGGCGCGTGACGAGCGTGGGAGAGGAAGGTACGACGGAGTATGTTTGCC 480
|||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
Sbjct 935 ACCTTGGGATGTGGCGCGTGACTAGCGTGGGAGAAGAAGGCACGACGGAGTATGTTTGTC 994
Query 481 GGTGGTTAGTGGCGGCGACGGGGGAGAATGCGGAGCCGGTGGTGCCTAGGTTTGAGGGGA 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 995 GGTGGTTAGTGGCGGCGACGGGGGAGAATGCGGAGCCGGTGGTACCTAGGTTTGAGGGGA 1054
Query 541 TGGATAAGTTTGCAGCCGCCGGGGTAGTTAAGCACACATGTCATTATAAGACCGGTGGAG 600
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1055 TGGATAAGTTTGCAGCCGCCGGGGTAGTTAAGCACACGTGTCATTATAAAACCGGTGGAG 1114
Query 601 ATTTCGCCGGACAAAA-GGTTCTTGTCGTCGGATGTGGAAACTCCGGTATGGAGGTTTGT 659
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 ATTTCGCCGGA-AAAAGGGTTCTTGTCGTCGGATGTGGAAACTCCGGTATGGAGGTTTGT 1173
Query 660 TTGGATCTCTGCAACTTCGGTGCTCAGCCTTCTCTCGTTGTCAGAGACGCTGTGCACGTC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 TTGGATCTCTGCAACTTCGGTGCTCAGCCTTCTCTCGTTGTCAGAGACGCTGTGCACGTC 1233
Query 720 CTACCACGAGAGATGTTGGGTACTTCAACTTTTGGGCTGTCCATGTTCTTACTCAAATGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1234 CTACCACGAGAGATGTTGGGTACTTCAACTTTTGGGCTGTCCATGTTCTTACTGAAATGG 1293
Query 780 CTGCCCATCCGGCTCGTTGACCGTTTCCTTTTGGTTGTTTCCCGGTTCATCCTCGGGGAT 839
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 CTGCCCATCCGGCTTGTTGACCGTTTCCTTTTGGTTGTTTCCCGGTTCATCCTCGGGGAT 1353
Query 840 ACCACC-TTGTTAGGTCTTAACCGGCCCCGGTTAGGCCCACTTGAGCTCAAAAATATCTC 898
|| ||| || |||||||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct 1354 ACTACCCTT-TTAGGTCTTAACAGGCCCCGGTTAGGTCCACTCGAGCTCAAAAATATCTC 1412
Query 899 CGGTAAAACTCCGGTTCTCGACGTTGGCACGCTAGCCAAAATCAAAACCGGAGACATTAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 CGGTAAAACTCCGGTTCTCGACGTTGGCACGCTAGCCAAAATCAAAACCGGAGACATTAA 1472
Query 959 GGTGTGTTCCGGGATAAGAAGGTTAAAACGACATGAAGTTGAGTTCGATAACGGAAAAAC 1018
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 GGTGTGTTCGGGGATAAGAAGGTTAAAACGACATGAAGTTGAGTTCGATAACGGAAAAAC 1532
Query 1019 AGAGAGATTTGACGCCATTATATTGGCAACTGGCTACAAAAGCAACGTACCCTCTTGGCT 1078
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1533 AGAGAGATTTGACGCCATTATATTAGCAACTGGCTACAAAAGCAACGTACCCTCTTGGCT 1592
Query 1079 AAAGGAGAATAAAATGTTTAGTAAGAAAGATGGATTTCCAATGCAAGAGTTCCCAGAGGG 1138
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1593 AAAGGAGAATAAAATGTTTAGTAAGAAAGATGGATTTCCAATACAAGAGTTCCCTGAGGG 1652
Query 1139 ATGGAGAGGGGAATGTGGGCTATACGCGGTCGGATTCACGAAACGTGGGATTTCTGGAGC 1198
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1653 ATGGAGAGGGGAATGTGGGCTATACGCGGTCGGATTCACAAAACGTGGGATTAGTGGAGC 1712
Query 1199 ATCAATGGATGCAAAGAGAATAGCTGAAGACATACACAAGTGTTGGAAACAAGACGAGCA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 ATCAATGGATGCAAAGAGAATAGCTGAAGACATACACAAGTGTTGGAAACAAGACGAGCA 1772
Query 1259 A 1259
|
Sbjct 1773 A 1773
> AT5G43890.1 | Symbols: YUC5, SUPER1 | Flavin-binding monooxygenase
family protein | chr5:17648857-17650131 REVERSE LENGTH=1275
Length=1275
Score = 63.9 bits (34), Expect = 4e-09
Identities = 50/57 (88%), Gaps = 3/57 (5%)
Strand=Plus/Plus
Query 618 GTTCTTGTCGTCGGATGTGGAAACTCCGGTATGGAGGTTTGT-TTGGATCTCTGCAA 673
||||||||||||||||||||||||||||| ||||| || | | ||| ||||| ||||
Sbjct 583 GTTCTTGTCGTCGGATGTGGAAACTCCGGCATGGAAGTCTCTCTTG-ATCTC-GCAA 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63654291060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5