BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942143

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25750.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   206    2e-52


> AT5G25750.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:8950884-8951143 
FORWARD LENGTH=216
Length=216

 Score =  206 bits (111),  Expect = 2e-52
 Identities = 134/145 (92%), Gaps = 2/145 (1%)
 Strand=Plus/Minus

Query  8    TTTGAGTTCTCAAATGTCTCAGCTTCACCTTCACCTTCAGCTTTATCGTCACTATCTCTC  67
            ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct  209  TTTGAGTTCTCAAATGTCTCAGCTTCACCTTCACCTTCAGCTTCACCGTCACTATCTCTC  150

Query  68   CCTCCCCCATTCTTCTTCTCTTAGTTCCAAATTACCGTCTTTACATCGTTGCCA-TGTAG  126
            |||||| ||||||||||||||| |||||| ||||||||| ||||||||  || | |||||
Sbjct  149  CCTCCCACATTCTTCTTCTCTTCGTTCCAGATTACCGTCATTACATCGCCGC-AGTGTAG  91

Query  127  CTTCTTCGCCAACCAACTCTCGCCT  151
            ||||||||||||||||||||| |||
Sbjct  90   CTTCTTCGCCAACCAACTCTCCCCT  66



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20861115835


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5