BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942149

Length=1570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17200.1 | Symbols: DSK2 | ubiquitin family protein | chr2:7...   233    3e-60


> AT2G17200.1 | Symbols: DSK2 | ubiquitin family protein | chr2:7481881-7485240 
REVERSE LENGTH=2058
Length=2058

 Score =  233 bits (126),  Expect = 3e-60
 Identities = 144/152 (95%), Gaps = 3/152 (2%)
 Strand=Plus/Plus

Query  75    CAATTCCGAAGCATGCTAGATTTGAATCCTCAGTTAAGGGAAATGATGCAGAATCCAGAT  134
             ||| |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||
Sbjct  1396  CAACTCCGAAGCATGCTAGATTCGAATCCTCAGTTGAGGGAAATGATGCAGAACCCAGAT  1455

Query  135   TTCCTTCGTCAGTTTAGTTCTCCGGAGATGATGCAGCAAATGATGACTCTACAGCAATCA  194
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1456  TTCCTTCGTCAGTTTAGTTCTCCGGAGATGATGCAGCAAATGATGACTCTACAGCAATCA  1515

Query  195   CTTTTATCTCAGAATAGAAACACAGCCAGCCA  226
             ||   ||||||||||||||| |||||||||||
Sbjct  1516  CT---ATCTCAGAATAGAAATACAGCCAGCCA  1544



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 77509641480


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5