BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942150
Length=480
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25760.1 | Symbols: PEX4, UBC21 | peroxin4 | chr5:8967655-89... 643 0.0
> AT5G25760.1 | Symbols: PEX4, UBC21 | peroxin4 | chr5:8967655-8969349
FORWARD LENGTH=745
Length=745
Score = 643 bits (348), Expect = 0.0
Identities = 408/438 (93%), Gaps = 0/438 (0%)
Strand=Plus/Plus
Query 27 AGGTTCATCGAGAGAAAGTAGCTGATCCAGATATTCAATTGGTGTGTGACGATACCAACA 86
|||| || |||||||||||||| ||||| |||||||||||| | ||||||||||||||||
Sbjct 136 AGGTACAGCGAGAGAAAGTAGCAGATCCTGATATTCAATTGATCTGTGACGATACCAACA 195
Query 87 TATTCAAATGGACCGCTCTTATCAAGGGACCGTCGGAGACTCCTTATGAAGGCGGTGTTT 146
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 196 TATTCAAATGGACCGCTCTTATCAAAGGACCTTCGGAGACTCCTTACGAAGGCGGTGTTT 255
Query 147 TTCAGCTTGCTTTTGCTGTTCCTGAACCATATCCTTTGCAACCTCCTCAAGTGCGATTCT 206
|||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 256 TTCAGCTTGCTTTTTCTGTTCCTGAACCTTATCCTTTGCAACCTCCTCAAGTTCGATTCT 315
Query 207 TGACCAAAATATTTCATCCAAATGTGCATTTCAAGACAGGGGAAATTTGCCTCGACATAT 266
||||||| ||||| ||||| ||||| |||||||||||||| ||||| || |||||||| |
Sbjct 316 TGACCAAGATATTCCATCCTAATGTTCATTTCAAGACAGGAGAAATATGTCTCGACATTT 375
Query 267 TGAAGAATGCGTGGAGTCCCGCTTGGACGCTTCAGTCCGTGTGTAGAGCTATCATAGCAT 326
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 376 TGAAGAATGCTTGGAGTCCTGCTTGGACGCTTCAGTCTGTGTGTAGAGCTATCATAGCAT 435
Query 327 TGATGGCTCATCCTGAGCCGGACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGAT 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TGATGGCTCATCCTGAGCCGGACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGAT 495
Query 387 CTGGGGATGTGAGAGGGTTCAATTCAATGGCACGCATGTACACGCGCCTCGCCGCAATGC 446
|||| |||||||||||||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct 496 CTGGTGATGTGAGAGGGTTCAATTCAATGGCACAAATGTATACACGCCTCGCCGCTATGC 555
Query 447 CAAAGAAAGGATGATGAT 464
| ||||||||||||||||
Sbjct 556 CTAAGAAAGGATGATGAT 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22856536885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5