BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942164
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25840.1 | Symbols: | Protein of unknown function (DUF1677)... 894 0.0
> AT5G25840.1 | Symbols: | Protein of unknown function (DUF1677)
| chr5:9010724-9011498 REVERSE LENGTH=775
Length=775
Score = 894 bits (484), Expect = 0.0
Identities = 536/562 (95%), Gaps = 0/562 (0%)
Strand=Plus/Plus
Query 1 AAAGATCACATATCCTTCCAATGGCCCCCCTTCAACGCACAATCTCTGATATTTCACACC 60
||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 49 AAAGACCACATATCCTTCCAATGGCCCCCCTTCAACGCACCATCTCGGATATTTCACACC 108
Query 61 AAATATCCATAGACAACACTCTAACAAAAGAACCATCTCCAACCGGAACCGCAACAACTT 120
|||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 109 AAATTTCAATAGACAACACTCTAACAAAAGAACCATCTCCAACCGCAACCGCAACAACTT 168
Query 121 TGTTGTCCTTATCAACGATATCCGAAGTGGAAGATGCAAAGTGTGAGTGTTGTGGCATGT 180
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TGTTATCCTTATCAGCGATATCCGAAGTGGAAGATGCAAAGTGTGAGTGTTGTGGCATGT 228
Query 181 CTGAAGAGTGCACGCCGGAGTACATACACCGTGTACGTTCAAAATTTTTAGGGAAGTTGA 240
|||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||
Sbjct 229 CTGAAGAGTGCACGCCGGAGTACATACACCGTGTGCGTTCAAAATTCTCAGGGAAGCTGA 288
Query 241 TTTGCGGGCTGTGTGAAAAGGCAGTGGAGGAGGAGATGGAGAAGATGATCAACAGTGATG 300
||||||||||||| ||||| || ||||||| ||||||||||||||||| ||||||||| |
Sbjct 289 TTTGCGGGCTGTGCGAAAAAGCGGTGGAGGGGGAGATGGAGAAGATGAACAACAGTGAAG 348
Query 301 TGGTGGTAGAGAAGCGGCGAGAAGAGGCAGTGAAGGCACATATGAGCGCATGTTCCCGGT 360
|| || | |||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 349 TGCTGATGGAGAAGCGGCGAGAAGAGGCAGTGAAGGTACACATGAGCGCATGTTCCCGGT 408
Query 361 TCAACAGGCTAGGCCGGAGTTATCCAGTGTTGTACCAAGCAGAAGCGGTTAAGGAAATGC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TCAACAGGCTAGGCCGGAGTTATCCAGTGTTGTACCAAGCAGAAGCGGTTAAGGAAATGC 468
Query 421 TGAAGAAGAGATCTAAGAAGATGGTTGGAGCCACCAAGCCGGAAAAAGGTGGCCTCGCTA 480
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 469 TGAAAAAGAGGTCTAAGAAGATGGTTGGAGCCACCAAGCCTGAAAAAGGTGGCCTCGCTA 528
Query 481 GGAGCTCTAGCTGCATGCCGGCTTTAGCTAAGGAGCTTAAAGATCGTACCTTGGTTAATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GGAGCTCTAGCTGCATGCCGGCTTTAGCTAAGGAGCTTAAAGATCGTACCTTGGTTAATT 588
Query 541 AGCTTATTTGTATACTCACGTA 562
||||||||||||||||||||||
Sbjct 589 AGCTTATTTGTATACTCACGTA 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5