BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942165
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25850.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 551 4e-156
> AT5G25850.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:9014082-9015917 FORWARD LENGTH=1446
Length=1446
Score = 551 bits (298), Expect = 4e-156
Identities = 344/367 (94%), Gaps = 0/367 (0%)
Strand=Plus/Plus
Query 1 CTTTACCTTGTCTGAAAATCATGCATCTAAACTATGTTCGGTTTCCTAATGTTGCCACTT 60
||||||| |||||||||||||||||||||||||||||| ||||||| |||| ||||||||
Sbjct 482 CTTTACCGTGTCTGAAAATCATGCATCTAAACTATGTTTGGTTTCCCAATGATGCCACTT 541
Query 61 TTGAGAGACTTGTCGCTTCTTGCCCTGTCTTAGAAGACTTAAAGATTGATGTATTATGGA 120
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TCGAGAGACTTGTCTCTTCTTGCCCTGTCTTAGAAGACTTAAAGATTGATGTATTATGGA 601
Query 121 ATGATGGAAGAGTCTATCGGGTGCAATCTCGTTCACTGAAGAGACTCCGTTTACTACGAA 180
||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 602 ATGATGGAAGAGTTTATCGAGTGAAATCTCGTTCACTTAAGAGACTCCGTTTACTACGAA 661
Query 181 GTTCTTCGATGGTGTTTGATTCTGTTCCGGGAGTTGTTATTGATGCTCCTCTACTATGCT 240
||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 662 GTTCTACTATGGTGTTTGATTCTGTTCCGGGTGTTGTTATTGATGCTCCTCTAATATGCT 721
Query 241 ATTTGAGAATCAGTGATAGTGTATCAGAAACCTATATAGTAAATAATCTGGAGTCCAATG 300
|||||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 722 ATTTGAGAATCAATGATCGTGTATCAGAAACCTATATATTAAATGATCTGGAGTCCAATG 781
Query 301 CCAAGTTAGATATTCATCTCGACTTTGGTTCTGAGGATTTTGGCGAAACAAGCGTTTCAT 360
||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct 782 CCAAGTTAGATATACATCTAGACTTTGGTTCTGAAGATTTTGGCGAACCAAGCGTTTCAT 841
Query 361 GGAGGAG 367
||||||
Sbjct 842 CGAGGAG 848
Score = 431 bits (233), Expect = 5e-120
Identities = 321/363 (88%), Gaps = 8/363 (2%)
Strand=Plus/Plus
Query 423 AAGATGGGTTCTGAGGAGATGAATCAAATAAGTTTTCTGCTCGGGATGACGAGGATCGTG 482
||||||||||||||||||||||||||||||||||| || ||| |||||| |||||| |||
Sbjct 1084 AAGATGGGTTCTGAGGAGATGAATCAAATAAGTTTCCTTCTCCGGATGAAGAGGATTGTG 1143
Query 483 GATATGACGATATTCATGTACACTTCCAAGGTATTTTTGGGTAGTGAGAAGATAAATCAA 542
||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||
Sbjct 1144 GATATGACGATATTCATGTACACTTCCAAGGTATTGTTGCATAGTGATAACATAAATCAA 1203
Query 543 CTAAGTTTTTCATCTGTTAATCCTAAGTGTCTGCTATCGTCGCTCCAGTTTGTTGAATTG 602
|||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |
Sbjct 1204 CTAAGTTTTTCATCTGTT---CCTAAGTGTCTACTATCATCGCTCCAGTTTGTTGAACTC 1260
Query 603 GATGCCCAAATCATGGGATTTGATGATGAACTACTGAATCTGGCGAAATACTTCTTAGAG 662
||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1261 AATGCCCAAATCTTGAGATTTGATGGCGAAATACTGAATCTGGCGAAATACTTCTTAGAG 1320
Query 663 AATTCATCTATCCTCCAAAAAATCACTGTACATC-GAAACAGGCATGGTTCAACATATGA 721
||||||||||||||||||||| ||||| |||||| ||| || | |||||||||| ||||
Sbjct 1321 AATTCATCTATCCTCCAAAAACTCACTCTACATCCGAA-CAAGTATGGTTCAACTTATGC 1379
Query 722 GGGGT-TGATAAACAAATTCCGAAGACGCTCTAGGATTTGCCAAGTCATCCTCATCTGAT 780
| | || || |||||||||||||||||||||| | ||||||| ||||||| | |||||
Sbjct 1380 GAA-TATGCTACACAAATTCCGAAGACGCTCTAGAACTTGCCAATTCATCCTAA-CTGAT 1437
Query 781 TTG 783
|||
Sbjct 1438 TTG 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5