BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942169
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25900.1 | Symbols: GA3, CYP701A3, ATKO1 | GA requiring 3 | ... 2206 0.0
> AT5G25900.1 | Symbols: GA3, CYP701A3, ATKO1 | GA requiring 3
| chr5:9036018-9038406 FORWARD LENGTH=1713
Length=1713
Score = 2206 bits (1194), Expect = 0.0
Identities = 1380/1471 (94%), Gaps = 7/1471 (0%)
Strand=Plus/Plus
Query 1 CTCTCCTTCACCAAAAAGAACATGTCTGAAGTTTCTTCTCTCCCCTCTGTTCCAGTGGTA 60
||||||||| ||| |||||||||||||||||| || |||||||||||||||||||||||
Sbjct 137 CTCTCCTTCTCCAGAAAGAACATGTCTGAAGTCTCCACTCTCCCCTCTGTTCCAGTGGTA 196
Query 61 CCAGGGTTTCCGGTTATTGGGAATTTGCTGCAACTAAAAGAGAAGAAACCTCACAAGACT 120
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 197 CCAGGGTTTCCTGTTATTGGGAACTTGCTGCAACTAAAAGAGAAGAAACCTCACAAGACT 256
Query 121 TTCACTAGATGGTCAGAGATTTATGGTCCTATTTACTCTATAAAGATGGGTTCTTCCTCT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 257 TTCACTAGATGGTCAGAGATTTATGGTCCTATTTACTCTATAAAGATGGGTTCTTCTTCT 316
Query 181 CTTATTGTCCTCAATTCAACTGAAACCGCCAAAGAGGCCATGGTGACGCGGTTTTCGTCT 240
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 317 CTTATTGTCCTCAATTCTACTGAGACTGCCAAAGAGGCCATGGTGACGCGGTTTTCGTCT 376
Query 241 ATCTCGACGAGAAAGTTGTCGAATGCGTTGACAGTCCTTACTTGCAACAAATCTATGGTT 300
||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 377 ATCTCAACGAGGAAGTTGTCAAATGCGTTGACAGTCCTTACTTGTGACAAATCTATGGTT 436
Query 301 GCTACTAGTGATTATGATGATTTCCACAAGTTGGTGAAACGGTGTATCTTGAATGGCCTT 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 437 GCTACTAGTGATTATGATGATTTCCACAAGTTGGTGAAACGGTGTCTCTTGAACGGTCTT 496
Query 361 TTGGGTGCTAATGCACAGAAACGAAAAAGACATTACAGAGATGCCCTCATTGAGAATGTG 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 497 TTGGGTGCTAATGCACAGAAACGAAAAAGACATTACAGAGATGCACTCATTGAAAATGTG 556
Query 421 TCTTCCAAGTTGCATGCCCACGCGAGGGATCATCCGCAAGAACCTGTAAACTTCAGGGCT 480
|||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| |||
Sbjct 557 TCTTCCAAGTTGCATGCCCATGCTAGGGACCATCCACAAGAACCTGTAAACTTCAGAGCT 616
Query 481 ATATTCGAGCATGAGCTTTTTGGAGTTGCATTGAAGCAAGCGTTTGGGAAAGATGTAGAG 540
||||| |||||||||||||| || || |||||||||||||| |||||||||||||| ||
Sbjct 617 ATATTTGAGCATGAGCTTTTCGGTGTAGCATTGAAGCAAGCTTTTGGGAAAGATGTGGAA 676
Query 541 TCCATTTATGTTAAGGAACTCGGTGTTACTTTGTCGAAAGATGAGATCTTCAAGGTTTTA 600
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 677 TCCATTTATGTTAAAGAACTCGGTGTGACTTTGTCGAAAGACGAGATCTTCAAGGTTTTA 736
Query 601 GTACATGACATGATGGAGGGTGCAATTGATGTTGATTGGAGAGACTTCTTCCCATACTTG 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GTACATGACATGATGGAAGGTGCAATTGATGTTGATTGGAGAGACTTCTTCCCATACTTG 796
Query 661 AAATGGATTCCGAATAAAAGTTTTGAATCAAGGATCCAGGAAAAGCATAAACGTAGGCTT 720
||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||| ||
Sbjct 797 AAATGGATTCCAAATAAAAGTTTTGAAGCAAGAATCCAGCAAAAGCATAAACGTAGACTC 856
Query 721 GCGGTGATGAATGCTCTGATTCAAGATCGACTGAAGCAGAATGATTCAGAATCGGATGAT 780
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 857 GCAGTGATGAATGCTCTGATTCAAGATCGACTGAAGCAGAATGGTTCAGAATCGGATGAT 916
Query 781 GATTGCTATCTCAACTTCTTGATGTCGGAAGCGAAAACACTAAC-AATGGAGCAAATTGC 839
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 917 GATTGCTATCTCAACTTCTTGATGTCGGAAGCGAAAACACTAACCAA-GGAGCAAATTGC 975
Query 840 AATATTGGTTTGGGAGACGATTATCGAGACAGCTGACACTACTTTGGTCACAACTGAATG 899
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 976 TATCTTGGTTTGGGAGACGATTATCGAGACAGCTGACACTACTTTGGTTACAACTGAATG 1035
Query 900 GGCCATGTATGAACTCGCAAAGCATCCAAGTGTTCAAGATCGTCTGTGTAAAGAAATCCA 959
|||||| ||||| ||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 1036 GGCCATCTATGAGCTCGCTAAGCATCCAAGTGTCCAAGATCGTCTGTGCAAAGAAATCCA 1095
Query 960 AAATATCTGCGGTGGAGAAAC-TATCAAAGAAGAGCAATTGCCTCAAGTTCCTTATCTCA 1018
|||| ||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 1096 AAATGTCTGCGGAGGAGAAAAGT-TCAAAGAAGAGCAATTGTCTCAAGTTCCTTATCTCA 1154
Query 1019 ATGGAGTCTTCCACGAAACGCTTAGAAAATACAGTCCTGCTCCTCTAGTTCCCATTCGCT 1078
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1155 ATGGAGTCTTTCATGAAACGCTTAGGAAATACAGTCCTGCTCCTCTAGTTCCCATTCGCT 1214
Query 1079 ATGCCCACGAGGATACACAAATCGGAGGCTATCTTGTCCCTGCAGGAAGTGAGATAGCAA 1138
| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1215 ACGCCCACGAGGATACGCAAATCGGAGGCTATCATGTCCCTGCAGGAAGTGAGATTGCAA 1274
Query 1139 TAAACATCTATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAGAGGAGTGGTGGC 1198
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1275 TAAACATATATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAGAGGACTGGTGGC 1334
Query 1199 CGGAACGGTTCCTGGATGAA---AAATACGAATCGTCGGATCTTCACAAGACAATGGCGT 1255
|||| ||||| || ||||| ||||| ||| |||| ||||||||||||||||||||||
Sbjct 1335 CGGAGCGGTTTCTTGATGATGGCAAATATGAAACGTCAGATCTTCACAAGACAATGGCGT 1394
Query 1256 TTGGAGCGGGAAAGAGGGTTTGTGCTGGTGCACTTCAAGCATCTCTCATGGCAGGCATTG 1315
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1395 TTGGAGCGGGAAAGAGGGTTTGTGCTGGTGCTCTTCAAGCATCTCTCATGGCAGGCATTG 1454
Query 1316 CCATTGGGAGATTAGTTCAAGAATTTGAATGGAAGCTTAGAGACGGCGAAGAAGAGAATG 1375
| ||||| |||||||| |||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1455 CTATTGGAAGATTAGTGCAAGAATTCGAGTGGAAGCTTAGAGATGGCGAAGAAGAGAATG 1514
Query 1376 TGGATACATATGGCTTGACCTCTCAAAAGCTTTATCCTCTCATGGCTATTATCAATCCAA 1435
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1515 TGGATACATATGGCTTGACCTCTCAGAAGCTTTATCCTCTTATGGCTATTATCAATCCAA 1574
Query 1436 GGCGTTCTTAAGACCCAAATCTCTTCTTTCT 1466
|||||||||||||| |||||||||||||||
Sbjct 1575 GGCGTTCTTAAGACAGAAATCTCTTCTTTCT 1605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72288784800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5