BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942172

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25900.1 | Symbols: GA3, CYP701A3, ATKO1 | GA requiring 3 | ...   392    1e-108


> AT5G25900.1 | Symbols: GA3, CYP701A3, ATKO1 | GA requiring 3 
| chr5:9036018-9038406 FORWARD LENGTH=1713
Length=1713

 Score =  392 bits (212),  Expect = 1e-108
 Identities = 247/264 (94%), Gaps = 1/264 (0%)
 Strand=Plus/Plus

Query  62    GTG-GATAGCAATAAACATCTATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAG  120
             ||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1263  GTGAGATTGCAATAAACATATATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAG  1322

Query  121   AGGACTGGTGGCCAGAGCGGTTTCTTGATAATAGCAAATACGAATCGTCAGATCTTCACA  180
             ||||||||||||| ||||||||||||||| || ||||||| ||| |||||||||||||||
Sbjct  1323  AGGACTGGTGGCCGGAGCGGTTTCTTGATGATGGCAAATATGAAACGTCAGATCTTCACA  1382

Query  181   AGACAATGGCCTTCGGAGCGGGAAAGAGGGTTTGTGCTGGTGCACTTCAAGCATCTCTCA  240
             |||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1383  AGACAATGGCGTTTGGAGCGGGAAAGAGGGTTTGTGCTGGTGCTCTTCAAGCATCTCTCA  1442

Query  241   TGGCAGGCATTGCCATTGGAAGGTTAGTTCAAGAATTTGAATGGAAGCTTAGAGACGGCG  300
             ||||||||||||| |||||||| ||||| |||||||| || |||||||||||||| ||||
Sbjct  1443  TGGCAGGCATTGCTATTGGAAGATTAGTGCAAGAATTCGAGTGGAAGCTTAGAGATGGCG  1502

Query  301   AAGAAGAGAATGTGGATACATATG  324
             ||||||||||||||||||||||||
Sbjct  1503  AAGAAGAGAATGTGGATACATATG  1526



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17593712150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5