BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942174

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25940.1 | Symbols:  | early nodulin-related | chr5:9054122-...   582    7e-166


> AT5G25940.1 | Symbols:  | early nodulin-related | chr5:9054122-9055251 
REVERSE LENGTH=578
Length=578

 Score =  582 bits (315),  Expect = 7e-166
 Identities = 363/387 (94%), Gaps = 0/387 (0%)
 Strand=Plus/Plus

Query  1    TCAAAAAAGCGACACTGAAAATGGAAAACCGGTCAGAAATGGTTAACCGGAGGCAGCAGA  60
            |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct  81   TCAAAAAAGCGACACTGAAAATGGAAAATCGGTCAGAAATGGGTAACCGGAGGCAGCAGA  140

Query  61   ATCTCTTCCTCATAGCTTCTCCCGACGAGATTGATAAGATCCGTCGAGCCGAAACTTCCA  120
            |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct  141  ATCTCTTCGTCATAGCTTCTCCCGACGAGATTGCTAAGATCCATCGAGCCGAAACTTCCA  200

Query  121  GTCAAGCCGGAGCTATTGCCGGAGCTAAGGCAGCCGCCGTAGCCGCCGTCGCCAGTGCGA  180
              ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  201  AACAAGCCGGAGCTATTGCCGGAGCTAAGGCCGCCGCCGTTGCCGCCGTCGCCAGTGCGA  260

Query  181  TTCCCACAGTAGCTGCGGTTCGCGTGTTCCCGTGGGCAAAGGCAAACCTTAACTACACTG  240
            |||||||||||||||| |||||  ||||||||||||| ||||||||||| ||||||||||
Sbjct  261  TTCCCACAGTAGCTGCCGTTCGTATGTTCCCGTGGGCTAAGGCAAACCTCAACTACACTG  320

Query  241  CTCAGGCACTCATTATATCTGCAGCATCCATCGCTGCGTTCTTCATAACCGCGGACAAAA  300
            |||| ||||||||||| ||| |||| || |||||||||||||||||||||||||| ||||
Sbjct  321  CTCAAGCACTCATTATTTCTTCAGCTTCTATCGCTGCGTTCTTCATAACCGCGGATAAAA  380

Query  301  CCATTCTACAAGGCGCGAGAAGAAACACCGAGGCTCAGTTAAAGAAAGCTCAGCAAGACT  360
            | |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct  381  CGATTCTACAAGGCGCAAGAAGAAACACCGAGGCTCAGTTAAAGAAAGTTCAGCAAGACT  440

Query  361  CTAAATAAATTCTCTTCTTATTGTAAC  387
            |||||||| ||||||||||||||||||
Sbjct  441  CTAAATAATTTCTCTTCTTATTGTAAC  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5