BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942179
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25970.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1748 0.0
AT5G11730.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 808 0.0
AT5G25990.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 132 9e-30
> AT5G25970.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:9066377-9067974
FORWARD LENGTH=1417
Length=1417
Score = 1748 bits (946), Expect = 0.0
Identities = 1105/1182 (93%), Gaps = 9/1182 (1%)
Strand=Plus/Plus
Query 6 ATATCTAGTGTAAGGATGCA--G-AGTAGGGTTATTCAGTTGGAAGAAGGTAAAGATATT 62
|||||||||||||||||||| | ||||||||| |||||||||||||||||||||| |||
Sbjct 239 ATATCTAGTGTAAGGATGCAGTGTAGTAGGGTTCTTCAGTTGGAAGAAGGTAAAGAGATT 298
Query 63 GTAGTTACGGGCGGCCGGGCCGGGCTAAATAAGGCGTTTCCTTTCAAGTTACTTCTCTTG 122
|||||||| || ||||| ||||||| | |||||||||||||| |||||| |||||||||
Sbjct 299 GTAGTTACAAGCAGCCGGACCGGGCTTACTAAGGCGTTTCCTTACAAGTTGCTTCTCTTG 358
Query 123 CTAGGATTTTTTCTAGCTTTTACTGTTGTTTTGTTCTTCATTAGTGTATCCA-CATTCAA 181
||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 359 CTAGGTTTTTTTCTAGCTTTTACTGTTGTTTTATTCTTCATTAGTGTATCCACCA-TCAA 417
Query 182 GTATTATGGAATCAATAGTGTAGTGACTTCAGTCACGTCTAGTTTTGTGCCTTGCCACGA 241
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 418 GTATTATGGAATCAATAGTGTAGTGACTTCAGTCACTTCTAGTTTTGTGCCTTGCCACGA 477
Query 242 GAAAAGAAACGATCTTCATAAATGGATTAAACCTCCTATGGTTCTCATGCATAATATGAG 301
||||| ||| |||||| |||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 478 GAAAATAAATGATCTTGATAAATGGATCAAACCTCTTGTGGTTCTCATGCATAATATGAG 537
Query 302 CGATGAAGAACTTCTTTGGCGTGCGTCTTTCATGCCTAAGAGGAAAGAGTATCCGTTTAA 361
||||||||| ||||||||| |||| |||||||||||| |||||||||||| ||||||||
Sbjct 538 CGATGAAGAGCTTCTTTGGGGTGCATCTTTCATGCCTCGGAGGAAAGAGTACCCGTTTAA 597
Query 362 TAGGGTGCCGAAAATCGCGTTTATGTTCTTGACAATGGGTCCTTTGCCGCTTGCACCGCT 421
| |||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 598 TCGGGTCCCTAAAATCGCGTTTATGTTCTTGACAATGGGTCCTTTGCCTCTTGCACCGCT 657
Query 422 TTGGGAAAGGTTATTAAAGGGTCATGAGAAGCATTATTCAGTTTACATCCATTCAACAGT 481
|||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||| | ||
Sbjct 658 TTGGGAGAGGTTATTAAAGGGTCATGAGAAGCTTTACTCAGTTTATATCCATTCACCTGT 717
Query 482 ATCGTCTTCAGCCAAGTTTCCAGCTTCCTCTGTTTTCTACCGTAGGCATATACCAAGTCA 541
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATCTTCTTCAGCTAAGTTTCCAGCTTCCTCTGTTTTCTACCGTAGGCATATACCAAGTCA 777
Query 542 GGTTGCAGAATGGGGAAGAATGACAATGTGCGATGCAGAGAGGCGGCTTCTTGCCAATGC 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 778 GGTTGCAGAATGGGGAAGAATGACAATGTGCGATGCAGAGAGGCGGCTTCTTGCAAATGC 837
Query 602 GCTACTCGATATCTCAAACGAATGGTTTGTTCTCCTCTCCGAGTCATGCATTCCCCTCTT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 838 GCTACTCGATATCTCAAACGAATGGTTTGTTCTCCTCTCCGAGTCATGCATTCCCCTATT 897
Query 662 CAACTTCACAACTATCTACACTTACATAACCAAATCAAAGCACAGCTTTATGGGTTCATT 721
||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||
Sbjct 898 CAACTTCACAACTATCTACACGTACATGACCAAATCAGAGCATAGCTTTATGGGTTCATT 957
Query 722 TGATGATCCTAGTCCCTATGGCCGAGGCCGCTACCACGGCAACATGGCCCCTGAAGTTTC 781
|||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 958 TGATGATCCTGGTGCATATGGCAGAGGCCGCTACCACGGCAACATGGCCCCTGAAGTTTT 1017
Query 782 CATAAACCAATGGAGAAAAGGGTCTCAATGGTTTGAGGTTAACCGGGAGCTTGCGGTTTC 841
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1018 CATAGACCAATGGAGAAAAGGGTCTCAATGGTTTGAGATTAACCGGGAGCTTGCGGTTTC 1077
Query 842 CATTGTCAAAGATACCTTGTATTACCCTAAATTCAAACAGTTTTGTAAACCTGCTTGTTA 901
||||||||||||||| || |||||||||||||||||| |||||||| |||||||||||||
Sbjct 1078 CATTGTCAAAGATACATTATATTACCCTAAATTCAAAGAGTTTTGTCAACCTGCTTGTTA 1137
Query 902 CGTGGACGAGCATTATTTCCCAACAATGTTGACAATTGAGAAACCGGCGGCCTTGGCCAA 961
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1138 TGTGGACGAGCATTATTTCCCAACAATGTTGACAATTGAGAAACCGGCCGCCTTGGCTAA 1197
Query 962 TCGAAGTGTGACTTGGGTCGACTGGTCGAGAGGTGGTGCCCACCCAGCTACATTTGGAGC 1021
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CCGAAGTGTGACTTGGGTCGACTGGTCGAGAGGTGGTGCCCACCCAGCTACATTTGGAGC 1257
Query 1022 ACAAGACATCAGTGAGGAGTTCTTTGC-ATGGGTTCTCAAAGGTGATAACTGCACTTACA 1080
||||||||||| ||||||||||||||| | | ||||||||||||| |||||||||||||
Sbjct 1258 ACAAGACATCAATGAGGAGTTCTTTGCCA-GAATTCTCAAAGGTGACAACTGCACTTACA 1316
Query 1081 ATGGTGGCTACACATCCATGTGTTATCTCTTTGCTAGAAAGTTTTCTCCGAGTGCTTTAG 1140
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1317 ATGGTGGCTACACATCCATGTGTTATCTCTTTGCTAGAAAGTTTTCTCCTAGTGCTTTGG 1376
Query 1141 AGCCTTTGATTCAAATTGCTCCCAAGA-TTCTGAGTTTTTGA 1181
|||||||| |||||||||| ||||| | || |||||| ||||
Sbjct 1377 AGCCTTTGGTTCAAATTGCACCCAA-ACTTTTGAGTTCTTGA 1417
> AT5G11730.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:3780311-3782713
FORWARD LENGTH=2053
Length=2053
Score = 808 bits (437), Expect = 0.0
Identities = 962/1208 (80%), Gaps = 65/1208 (5%)
Strand=Plus/Plus
Query 11 TAGTG-TAAGGATGCAGAGTAGGGTTATTCAGTTGGAAGAAGGTAAAGATATTGTAGTTA 69
||||| |||||||||||| |||| || | |||||||||||||| ||||| | || | | |
Sbjct 642 TAGTGTTAAGGATGCAGAATAGGATTGTACAGTTGGAAGAAGGAAAAGAAAATGGAATCA 701
Query 70 CGGGCGGCCGGGCCGGGCTA-AAT-AAGGCGTTTCCTTTC-AAGTTACTTC-TCTTGCTA 125
| | || | |||| | || |||| ||||| || || | || | || |||||
Sbjct 702 C---AGTTCGATCAGGGC-ATTATAAAGG-ATTTCC-ATCGAAACTGCTACTTC-TGCTA 754
Query 126 GGATTTTTTC-TAGC-TTTTACTGTTGTTTTGTTCTTCATTAGTGTATCCACAT-TCAAG 182
|| || |||| || | |||| ||||| | | ||| ||||||||||||| || | |||||
Sbjct 755 GGGTTGTTTCTTA-CATTTT-CTGTTACTGTCTTCATCATTAGTGTATCTAC-TATCAAG 811
Query 183 TATTA-TGGAAT-CAATAGTGTAGTGACTTCAGTCACGTCTAGTTTTGTGCCTTGCCACG 240
|| || |||||| ||| |||||||| || ||||||| || || |||||||| |||| |
Sbjct 812 TA-TACTGGAATACAA-AGTGTAGTAACCACAGTCACTTCAAGCTTTGTGCCATGCCGTG 869
Query 241 AGAAAAGAAACG-AT--CTTCA-TAAATGGATTA-AACCTCCTATGGTTCTCATGCATAA 295
|| ||| || || || | |||||||| || |||||||| |||| | ||||||||
Sbjct 870 AG-GGGGAACCGAATAGTTTGAGTAAATGGA-TACAACCTCCTGCGGTTTTGATGCATAA 927
Query 296 TATGAGCGATGAAGAACTTCTTTGGCGTGCGTCTTTCAT-GCCTAAG-AGGAAAGAGTAT 353
|||||||||||||| |||||||||||||| ||||| | |||| | || ||||| |||
Sbjct 928 CATGAGCGATGAAGAGCTTCTTTGGCGTGCTTCTTT-TTGGCCT-CGTAGAAAAGAATAT 985
Query 354 CCGTTTAATA-GGGTGCCGAAA-ATCGCGTTTATGTTCTTGAC-AATGGGTCCTTTGCCG 410
|||||||| | |||| || ||| | ||||||||||||||||| || || || || |||
Sbjct 986 CCGTTTAA-ACGGGTTCC-AAAGGTTGCGTTTATGTTCTTGACTAA-AGGCCCCTTACCG 1042
Query 411 CTTGCACCGCTTTGGGAAAGGTTATTAAAGGGTCATGAGAA--GCATTATTCAGTTTACA 468
||||| |||||||||| ||||| || |||||||| | || || ||| || ||||||
Sbjct 1043 CTTGCTTCGCTTTGGGAGAGGTTCTTGAAGGGTCA-CA-AAGGGCTTTACTCGGTTTACC 1100
Query 469 TCCATTCA-ACAGTATCGTCTT-CAGCCAAGTTTCCAGCTTCCTCTGTTTTCTACCGTAG 526
| ||| || || | || | || ||||||||||||||||| |||||||||| |||| ||
Sbjct 1101 TTCATCCACACCCT-TC-TTTTACAGCCAAGTTTCCAGCTAGCTCTGTTTTCCACCGGAG 1158
Query 527 GCATATACCAAGTCAGGTTGCAGAATGGGGAAGAATGACAATGTGCGATGCAGAGAGGCG 586
||| || ||||| ||||||||||||||||| |||||| | |||||||||||||||| |||
Sbjct 1159 GCAAATTCCAAGCCAGGTTGCAGAATGGGGGAGAATGTCCATGTGCGATGCAGAGAAGCG 1218
Query 587 GCTTCTTGCCAATGCGCTACTCGATATCTCAAACGAATGGTTTGTTCTCCTCTCCGAGTC 646
|||||||||||| || || || ||| | || |||||||||||||||||| |||| |||||
Sbjct 1219 GCTTCTTGCCAACGCCCTGCTTGATGTGTCCAACGAATGGTTTGTTCTCGTCTCAGAGTC 1278
Query 647 ATGCATTCCCCTCTTCAACTTCACAACTATCTACA-CTTACATAA-CCAAATCAAAGCAC 704
||||||||| |||| |||||||||||| || |||| | ||| ||| || |||||| |||
Sbjct 1279 ATGCATTCCACTCTACAACTTCACAACCATTTACAGC-TACTTAAGCC-GATCAAAACAC 1336
Query 705 AGCTTTATGGGTTCATTTGATGATCCTAGTCCCTATGGCCGAGGCCGCTACCACGGCAAC 764
||||| |||||| | |||||||| ||| | || | ||| || ||||||||| |||| |||
Sbjct 1337 AGCTTCATGGGTGCTTTTGATGACCCTGGACCGTTTGGGCGTGGCCGCTACAACGGGAAC 1396
Query 765 ATGGCCCCTGAAGTTTCCATAAACC-AATGGAGAAAAGGGTCTCAATGGTTTGAGGTTAA 823
|||| ||||||||| || | ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1397 ATGGAACCTGAAGTTCCCCT-TACCAAATGGCGAAAAGGGTCTCAATGGTTTGAGGTTAA 1455
Query 824 CCGGGAGCTTGCGGTTTCCATTGTCAAAGATACCTTGTATTACCCTAAATTCAAACAGTT 883
|||||| || || | | ||||||||||||| || ||||||||||| ||||||||| ||||
Sbjct 1456 CCGGGACCTGGCAGCTACCATTGTCAAAGACACATTGTATTACCCGAAATTCAAAGAGTT 1515
Query 884 TTGTAAACCTGCTTGTTACGTGGACGAGCATTATTTCCCAACAATGTTGACAATTGAGAA 943
|| | |||||||| || |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1516 CTGCAGGCCTGCTTGCTATGTGGACGAGCATTACTTCCCAACAATGTTGACGATTGAGAA 1575
Query 944 ACCGGCGGCCTTGGCCAATCGAAG-TGTGACTTGGGTCGACTGGTCGAGAGGTGGTGCCC 1002
||| | | |||||| || || || | |||| ||||| ||||||||||| || ||| |||
Sbjct 1576 ACCAACAGTCTTGGCTAACCGGAGCT-TGACATGGGTGGACTGGTCGAGGGGCGGTCCCC 1634
Query 1003 ACCCAGCTACATTTGGAGC-A-CAAGACATCAGTGAGGAGTTCTTTGCATGGGT-TCTCA 1059
|||||||||| ||||| || | | ||||| | || | ||||||| | | | | |
Sbjct 1635 ACCCAGCTACGTTTGG-GCGATCG-GACATTACAGAAAACTTCTTTGGAAAAATCTTTGA 1692
Query 1060 AAGGT-GATAACTGCACTTACAATGGTGGCTACACATCCATGTGTTATCTCTTTGCTAGA 1118
|| || ||||||| |||||||||| || |||| |||||||||||||||||||| ||
Sbjct 1693 T-GGAAGA-AACTGCAGTTACAATGGTCGCAACACTTCCATGTGTTATCTCTTTGCGAGG 1750
Query 1119 AAGTTTTCTCCGAGTGCTTTAGAGCCTTTGATTCAAATTGCTCCCAAGATTCT-GAGTTT 1177
|||||| ||||||||||||| ||||||||| |||| ||||||||||||||||| | | ||
Sbjct 1751 AAGTTTGCTCCGAGTGCTTTGGAGCCTTTGCTTCACATTGCTCCCAAGATTCTTG-GATT 1809
Query 1178 TTGAGTAG 1185
||||||||
Sbjct 1810 TTGAGTAG 1817
> AT5G25990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is: Core-2/I-branching
beta-1,6-N-acetylglucosaminyltransferase family
protein (TAIR:AT5G25970.1); Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa -
736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:9076107-9077379 REVERSE
LENGTH=306
Length=306
Score = 132 bits (71), Expect = 9e-30
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 736 CCTATGGCCGAGGCCGCTACCACGGCAACATGGCCCCTGAAGTTTCCATAAACCAATGGA 795
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 224 CCTATGGCCGAGGCCGCTACTACGGCAACATGGCCCCTGAAGTTTCCATAGACCAATGGA 283
Query 796 GAAAAGGGTCTCAATGGTTT 815
||||||||||||| ||||||
Sbjct 284 GAAAAGGGTCTCAGTGGTTT 303
Score = 56.5 bits (30), Expect = 6e-07
Identities = 35/37 (95%), Gaps = 1/37 (3%)
Strand=Plus/Plus
Query 590 TCT-TGCCAATGCGCTACTCGATATCTCAAACGAATG 625
||| |||| ||||||||||||||||||||||||||||
Sbjct 185 TCTATGCCTATGCGCTACTCGATATCTCAAACGAATG 221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5