BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942188

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26050.1 | Symbols:  | Plant self-incompatibility protein S1...   760    0.0  


> AT5G26050.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr5:9103179-9104100 REVERSE LENGTH=922
Length=922

 Score =  760 bits (411),  Expect = 0.0
 Identities = 482/515 (94%), Gaps = 9/515 (2%)
 Strand=Plus/Plus

Query  4    GCGATCATTTGATCGAAATGGGGAGAGACCTCGGCTGGTGCTTCTTCGTGGCGACGGTTG  63
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct  207  GCGATCATTTGATCGAAATGGGAAGAGACCTCGGCTGGTGCTTCTTCGTGGCGACGGTT-  265

Query  64   TGGTGGTAGCAGC--T-TTGTTACCCACACTAACCATGGCGGGTCGTCTAGAGCTAAAGA  120
            |  || |||||||  | ||||||||| ||| |||||| |||||||| |||||||||||||
Sbjct  266  T--TGTTAGCAGCGGTGTTGTTACCCGCACCAACCATAGCGGGTCGACTAGAGCTAAAGA  323

Query  121  ACGAAATCTCAGGGGTCGCTAGTGTCCGTAAAGCGAAGCTAGCCGTGCGGTGCTGGTCAA  180
            | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  ATGAAATCTCGGGGGTCGCTAGTGTCCGTAAAGCGAAGCTAGCCGTGCGGTGCTGGTCAA  383

Query  181  ACGAGGATGACCTAGGGTGGGATATGATAAAGCCAAAGCAATCAC-GAGTATGGACGTTC  239
            ||||||||||||| |||||| ||||| ||||||| |||||||| | || |||||| ||||
Sbjct  384  ACGAGGATGACCTCGGGTGGAATATGCTAAAGCCGAAGCAATCGCGGA-TATGGAAGTTC  442

Query  240  ACGACAATGAACATGTGGCCCTTTCAGAAAACTGAGTTCCGTTGCCAGTTTCGTAGCGGG  299
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  443  ACGACAATGAACATGTGGCCCTTTCAGAAAACCGAGTTCCGTTGCCAGTTTCGTAGCGGG  502

Query  300  TTTGGAACCACGAACGAAGACGTTGTGACGGTGTTTTCTGTCAAGGGCGGGTTTCGAAAG  359
            ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct  503  TTTGGAACCACGAACGAAGACGTGGTGACAGTGTTTTCTGTCAAGGACGGGTTTCGAAAG  562

Query  360  GAATGTGGGGTGGGAGGGGACGAGTGCTTTTGGGTAGGGAAGAGAGATGGATTATATCTA  419
             |||| ||||||||||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct  563  CAATGCGGGGTGGGAGGGGACGAGTGCTTTTGGGTAGCGAAGAGAGATGGGTTCTATCTA  622

Query  420  AGAAGGATCGTAAAAGATGGAGGAGGGGATAGTCGCAAGAAATATGTTGATGTTCTCAAA  479
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  623  AGAAGGATTGTAAAAGATGGAGGAGGGGATAGTCGCAAGAAATATGTTGATGTTCTCAAA  682

Query  480  AGCAAATGGGTTTGGAAATGGTGAA-TCTTCAATT  513
            ||||||||||||||||||||||||| |||||||||
Sbjct  683  AGCAAATGGGTTTGGAAATGGTGAAATCTTCAATT  717



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25016605206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5