BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942189

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26060.1 | Symbols:  | Plant self-incompatibility protein S1...   710    0.0  


> AT5G26060.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr5:9104847-9105524 REVERSE LENGTH=678
Length=678

 Score =  710 bits (384),  Expect = 0.0
 Identities = 460/497 (93%), Gaps = 4/497 (1%)
 Strand=Plus/Plus

Query  1    ACATAATCAGAATTACACATATGGGAACTAACAAGATTCCCAAAACCCTCAACGGGAACT  60
            ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| 
Sbjct  28   ACAAAATCAGAATTACACAAATGGGAACTAATAAGATTCCCAAAACCCTCAACGGGAACC  87

Query  61   TTGTTCTTATACTTATCATCACCATAATGATGGTGACTCACTCCCATGGATTTCGACTGG  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  88   TTGTTCTTATACTTATCATCACCATAATGATGGTGACTCACTCCCATGGATTTCAACTGG  147

Query  121  AGATCAAGAACGAGCTATCGGGAAGGTACAGGAAGCTTGTGTACAAATGCTGGTCCCGCG  180
            |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  148  AGATCAGGAACGAGCTATCAGGAAGGTACAGGAAGCTTGTGTACAAATGCTGGTCCCGCG  207

Query  181  ATAATGATTTCGGGTGGCGACAGAACTGGCCAGGTCAGTACAAGGACTGGTCCTTCGCCA  240
            |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  208  ATAACGATTTCGGGTGGCGACAGAACTGGCCAGGCCAGTACAAGGACTGGTCCTTCGCCA  267

Query  241  TTTCGCTATTCCACACCTTCTTCCACTGCCACTTCCGTACAGGGTATGGACGCGTGGATA  300
            |||| ||||||||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct  268  TTTCACTATTCCACACCTACTTCTACTGCCACTTCCGTACAGCGTATGGACGCGTGGATA  327

Query  301  AGAAGCTAGTTGTGTCGTGGGACCTAAAAGACCG-GTGTGGGGACAGGACCAAATGCACT  359
            || ||||||| | ||| |||||  ||||| |  | ||||||||||||||  |||||||||
Sbjct  328  AGCAGCTAGTAGCGTCATGGGAGTTAAAACAA-GAGTGTGGGGACAGGAGAAAATGCACT  386

Query  360  TGGGTCGTTAAGAAGGACGGACTCTACTTGAGA-AGATGGAAGACCATATTTTTTAGTAA  418
            ||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct  387  TGGGTCGTTAAGAAGGACGGACTCTACTTGAGACA-ATGGAAGACCAAATTTTTTAGTAA  445

Query  419  CAAGTATGGTAATGAAAGGTGGAATGACTATATTCCACATGATGTCCTCGAGAACCGTTG  478
            |||||||||||| |||||||||||||  ||||||  ||||||||||||| ||||  ||||
Sbjct  446  CAAGTATGGTAACGAAAGGTGGAATGTGTATATTGAACATGATGTCCTCAAGAAAAGTTG  505

Query  479  GAGCTAATTAATAATTT  495
            ||||||||||| |||||
Sbjct  506  GAGCTAATTAACAATTT  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24112390560


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5