BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942208
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26210.1 | Symbols: AL4 | alfin-like 4 | chr5:9158318-916038... 1258 0.0
> AT5G26210.1 | Symbols: AL4 | alfin-like 4 | chr5:9158318-9160383
REVERSE LENGTH=1178
Length=1178
Score = 1258 bits (681), Expect = 0.0
Identities = 762/800 (95%), Gaps = 10/800 (1%)
Strand=Plus/Plus
Query 19 AGATGGACGCAGGTGGCGCGTACAATCCACGCACTGTTGAAGAGGTGTTTAGGGATTTTA 78
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 AGATGGAAGCAGGTGGCGCGTACAATCCACGCACTGTTGAAGAGGTGTTTAGGGATTTTA 220
Query 79 AGGGTCGTAGAGCTGGCATGATTAAGGCTTTAACCACTGATGTTCAGGAGTTTTTCCGGC 138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 221 AGGGTCGTAGAGCTGGCATGATTAAGGCTTTAACCACTGATGTTCAGGAGTTTTTCCGAC 280
Query 139 TTTGTGATCCCGAAAAGGAGAACCTTTGCCTTTATGGCCATCCCAATGAGCACTGGGAGG 198
|||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
Sbjct 281 TTTGTGATCCCGAAAAGGAGAACCTTTGCCTTTACGGACATCCAAATGAGCACTGGGAAG 340
Query 199 TGAATTTGCCAGCTGAAGAGGTTCCCCCGGAGCTCCCAGAGCCTGTCTTGGGTATCAACT 258
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 341 TGAATTTGCCAGCTGAAGAGGTTCCTCCTGAGCTCCCAGAGCCTGTCTTGGGTATCAATT 400
Query 259 TTGCCCGAGACGGGATGGCGGAAAAGGATTGGCTGTCCCTTGTTGCTGTCCACAGTGATG 318
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 401 TTGCCAGAGACGGGATGGCGGAAAAGGATTGGTTGTCCCTTGTTGCTGTCCACAGTGATG 460
Query 319 CCTGGCTTCTTGCTGTTGCTTTCTTTTTTGGAGCCAGGTTTGGATTTGACAAAGCTGATA 378
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 CTTGGCTTCTTGCTGTTGCTTTCTTTTTTGGAGCCAGGTTTGGATTTGACAAAGCTGATA 520
Query 379 GGAAGAGGCTTTTCAATATGGTGAATGACCTCCCAACAAT-TTTCGAGGTTGTGGCTGGC 437
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 521 GGAAGAGGCTTTTCAATATGGTGAATGACCTCCCAACAATCTTT-GAGGTTGTAGCTGGC 579
Query 438 ACTGCTAAGAAACAAGGAAAGGATAAGTCCTCTGTTTCCAACAACAGCAGCAACAGATCC 497
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 580 ACTGCTAAGAAACAAGGAAAAGATAAGTCCTCTGTTTCCAACAACAGCAGCAACAGATCC 639
Query 498 AAATCAAGCTCCAAGCGAGGATCTGAATCCCGAGCCAGGTTCTCAAAGCCAGTGCCCAaa 557
|||||||||||||||||||||||||||||||| |||| |||||||||||| | ||| |||
Sbjct 640 AAATCAAGCTCCAAGCGAGGATCTGAATCCCGTGCCAAGTTCTCAAAGCCGGAGCCGAAA 699
Query 558 gatgaagatgaagaggaagaagaggaaggtgtggaagaggaggatgatgatgagcaaggt 617
||||| || | ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 700 GATGATGA-G--GAGGAGGAAGAGGAAGGTGTGGAAGAGGAGGATGAGGATGAGCAAGGT 756
Query 618 gaaACACAGTGTGGGGCATGTGGTGAGAGCTATGCAGCTGATGAGTTCTGGATTTGCTGT 677
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GAAACACAGTGTGGAGCATGTGGTGAGAGCTATGCAGCTGATGAGTTCTGGATTTGCTGT 816
Query 678 GACCTCTGTGAGATGTGGTTTCATGGAAAGTGTGTGAAGATAACACCAGCAAGGGCTGAG 737
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 817 GACCTCTGTGAGATGTGGTTTCATGGAAAGTGTGTTAAGATAACACCAGCAAGAGCTGAG 876
Query 738 CACATCAAGCAATACAAGTGCCCATCTTGCAGCAACAAGAGGGCTCGTTCCTAAACTTGT 797
||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||
Sbjct 877 CACATCAAGCAATACAAGTGCCCTTCTTGCAGCAACAAAAGGGCTCGTTCCTAAATTTGT 936
Query 798 -G---GC-CGCTTCTGTGTA 812
| || ||||||||||||
Sbjct 937 TGACCGCTCGCTTCTGTGTA 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39534273689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5