BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942209
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26220.1 | Symbols: | ChaC-like family protein | chr5:91629... 1024 0.0
> AT5G26220.1 | Symbols: | ChaC-like family protein | chr5:9162969-9164685
REVERSE LENGTH=932
Length=932
Score = 1024 bits (554), Expect = 0.0
Identities = 652/699 (93%), Gaps = 8/699 (1%)
Strand=Plus/Plus
Query 1 GTGTGAGGCTAAGGATCAAAGATGGTTTTGTGGGTATTTGGATATGGATCTTTAATCTGG 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 52 GTGTGAGGCTAAGGATCAAAGATGGTTTTGTGGGTATTTGGATATGGTTCTTTGATCTGG 111
Query 61 AACCCAGGTTTTGATTTTGATGAAAAAATCATTGGTTACATCAAAGATTATAAACGTGTC 120
||||||||||||||||||||||||||| |||||||||| ||||| || ||||||||||||
Sbjct 112 AACCCAGGTTTTGATTTTGATGAAAAACTCATTGGTTATATCAAGGACTATAAACGTGTC 171
Query 121 TTTGATCTAGCGTGTATTGATCATAGAGGCACTCCTGAACATCCTGCAAGAACTTGCACG 180
|| |||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||
Sbjct 172 TTCGATCTAGCGTGTATTGATCATAGAGGTACTCCTGAACATCCTGCTAGGACTTGTACG 231
Query 181 TTGGAGCAATCCACCGGAGCTATTTGCTGGGGAGCTGCTTATTGTGTTCGTGGAGGACCA 240
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 232 CTGGAGCAATCCACCGGAGCTATTTGCTGGGGTGCTGCTTATTGTGTTCGTGGAGGACCA 291
Query 241 GAGAAGGAGAAACTAGCAATGGAGTACTTGGAACGAAGAGAGTGTGAATACGACTCCAAA 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 292 GAGAAAGAGAAACTAGCAATGGAGTACTTGGAACGAAGAGAGTGTGAATACGACTCAAAA 351
Query 301 ACACTTGTTGAGTTTTACACTGAAAATGACTCTTCAACGGCAACGCCGATCGTAACCGGA 360
|||||||||||||||||||||||||||||| |||| | | |||| ||||| ||||||
Sbjct 352 ACACTTGTTGAGTTTTACACTGAAAATGACACTTC--C---A-CGCCAATCGTTACCGGA 405
Query 361 GTTATTGTCTTTACGTCAACGCCAGACAAAGTGTCGAACAAATACTATTTAGGTCCAGCT 420
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 406 GTTATTGTCTTCACGTCAACACCAGACAAAGTGTCGAACAAATACTACTTAGGTCCAGCT 465
Query 421 CCACTGGAAGAAATGGCCAGGCAAATCGCTACAGCTACTGGACCGTGTGGCAACAACAGA 480
||| ||||||||||||| |||||||||||||| ||| | ||||| ||||| |||||| ||
Sbjct 466 CCATTGGAAGAAATGGCGAGGCAAATCGCTACGGCTTCGGGACCTTGTGGGAACAACCGA 525
Query 481 GAGTATCTTTTCAAGCTAGAGAAAGCAATGTACGATATTGAGCATGAGGAAGAGTATGTG 540
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 526 GAGTATCTTTTCAAGCTAGAGAAAGCAATGTTCGACATTGAGCATGAGGAAGAGTATGTG 585
Query 541 ATTGAGTTAGCGAATGAGGTTAGGAAACAACTCGATTTACCGGAGGAAGTGAAGGCATTG 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 586 ATTGAGTTAGCGAATGAGGTTAGGAAGCAACTCGATTTACCGGAGGAAGTGAAGGCATTG 645
Query 601 TTGAAGCCTGTGGTTTCTCGTGT-TCCCGTCAAGTCTCAAGCTCATGTTTCCACTCGTCA 659
||||||||| | ||||||| ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 646 TTGAAGCCTATTGTTTCTCATGTATCC-GTCAAGTCTCAAGCTCATGTTTCCACTCGTCA 704
Query 660 AAGGGTCTTTGCATCATGAAGATAGCAAAAGTCGTGGAG 698
| |||||||||||||||||||| ||||||||| |||||
Sbjct 705 ACGGGTCTTTGCATCATGAAGACAGCAAAAGTTATGGAG 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33807580931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5