BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942227

Length=317
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26673.1 | Symbols:  | Putative membrane lipoprotein | chr5:...   316    6e-86


> AT5G26673.1 | Symbols:  | Putative membrane lipoprotein | chr5:9279309-9279611 
FORWARD LENGTH=303
Length=303

 Score =  316 bits (171),  Expect = 6e-86
 Identities = 231/259 (89%), Gaps = 8/259 (3%)
 Strand=Plus/Plus

Query  21   ATGGCGGCAAACATGTGGAAGATGATGATGATGGTGGCATTGATAATGATAGGATGTGGT  80
            |||||||||||||||||||||| ||| |||||| | || |||||||||||||||||||||
Sbjct  1    ATGGCGGCAAACATGTGGAAGACGATTATGATGATAGCTTTGATAATGATAGGATGTGGT  60

Query  81   TTACAAGCATGCAATGGAATGAATGTGGGTAAAAGCAATCCAACGATGTTCAA-AGGATT  139
            |||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||| ||
Sbjct  61   TTACAAGCATGCAATGGAATGAATGTGGATAAAAGCAAGCCAACGATGTTTAATAGG-TT  119

Query  140  TGCCTGCTTCAGAAGATGTTCCATAACTTGTAGTGTaaaccaaaaccaaaaccaaaacaa  199
            | ||||||||||||||||||||||||||||||||||| |||||| || | || |||||  
Sbjct  120  TACCTGCTTCAGAAGATGTTCCATAACTTGTAGTGTAGACCAAAGCCTAGAC-AAAACC-  177

Query  200  aaaccggtgttacaaaaaaTGTTTGAAGAAATGTGGTCTAGTATGGGTTTCAAAACCAAA  259
               ||  |||||||||||||||||||| |||||||||||||| | || ||||||||||||
Sbjct  178  ---CCA-TGTTACAAAAAATGTTTGAACAAATGTGGTCTAGTTTTGGATTCAAAACCAAA  233

Query  260  ACCAGCATCATCATCATCA  278
            |||| ||||||||||||||
Sbjct  234  ACCAACATCATCATCATCA  252



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14728450457


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5