BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942227 Length=317 Score E Sequences producing significant alignments: (Bits) Value AT5G26673.1 | Symbols: | Putative membrane lipoprotein | chr5:... 316 6e-86 > AT5G26673.1 | Symbols: | Putative membrane lipoprotein | chr5:9279309-9279611 FORWARD LENGTH=303 Length=303 Score = 316 bits (171), Expect = 6e-86 Identities = 231/259 (89%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 21 ATGGCGGCAAACATGTGGAAGATGATGATGATGGTGGCATTGATAATGATAGGATGTGGT 80 |||||||||||||||||||||| ||| |||||| | || ||||||||||||||||||||| Sbjct 1 ATGGCGGCAAACATGTGGAAGACGATTATGATGATAGCTTTGATAATGATAGGATGTGGT 60 Query 81 TTACAAGCATGCAATGGAATGAATGTGGGTAAAAGCAATCCAACGATGTTCAA-AGGATT 139 |||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||| || Sbjct 61 TTACAAGCATGCAATGGAATGAATGTGGATAAAAGCAAGCCAACGATGTTTAATAGG-TT 119 Query 140 TGCCTGCTTCAGAAGATGTTCCATAACTTGTAGTGTaaaccaaaaccaaaaccaaaacaa 199 | ||||||||||||||||||||||||||||||||||| |||||| || | || ||||| Sbjct 120 TACCTGCTTCAGAAGATGTTCCATAACTTGTAGTGTAGACCAAAGCCTAGAC-AAAACC- 177 Query 200 aaaccggtgttacaaaaaaTGTTTGAAGAAATGTGGTCTAGTATGGGTTTCAAAACCAAA 259 || |||||||||||||||||||| |||||||||||||| | || |||||||||||| Sbjct 178 ---CCA-TGTTACAAAAAATGTTTGAACAAATGTGGTCTAGTTTTGGATTCAAAACCAAA 233 Query 260 ACCAGCATCATCATCATCA 278 |||| |||||||||||||| Sbjct 234 ACCAACATCATCATCATCA 252 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14728450457 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5