BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942228
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26717.1 | Symbols: | Putative membrane lipoprotein | chr5:... 368 1e-101
AT5G26692.1 | Symbols: | Putative membrane lipoprotein | chr5:... 355 1e-97
> AT5G26717.1 | Symbols: | Putative membrane lipoprotein | chr5:9284558-9284997
FORWARD LENGTH=440
Length=440
Score = 368 bits (199), Expect = 1e-101
Identities = 255/282 (90%), Gaps = 4/282 (1%)
Strand=Plus/Plus
Query 1 AAAGAAA-C-TTGTAAGAG-AAAATGACAGGAAACGTGTGTAAGATGATGATGTTGATGG 57
||||||| | ||| ||||| |||||||| |||||| ||| ||||||||||||||||||||
Sbjct 33 AAAGAAATCTTTG-AAGAGAAAAATGACGGGAAACATGTATAAGATGATGATGTTGATGG 91
Query 58 CATTGATAATGATGGCATGTGGTTTACAAGCATGCAATGGAACGAATTTTGATGAATTCA 117
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||
Sbjct 92 CATTGATAATGATGGCATGTGGTTTACAAGCATGCAATGCAACGAATGTTGATGAAAGCA 151
Query 118 AGCCAGATTCAAGATTTGTGTGCTTCAAAAACTGTTCTATAAGTTGTGGCAAACAAAACA 177
|||||||| ||| | ||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 152 AGCCAGATCCAAAACTTGAGTGCTTCAAAAACTGTTCCATAAGTTGTGGCAAACAAAACA 211
Query 178 AACCATGTTACCAAGATTGTTTGACGAAATGTGGTCTCCCACAACGACCTTCAAGATCAA 237
|||| |||||| |||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 212 AACCTTGTTACGAAGATTGTTTGACGAAATGTGGTCTCCCACAACGTCCTTCTACATCAA 271
Query 238 CACCATCATCTTCCCCCACCGCGGCTTAATCTGTTTCCATTT 279
||||| |||||||| ||||| |||| |||| ||||||||||
Sbjct 272 CACCAGCATCTTCCTCCACCACGGCATAATAAGTTTCCATTT 313
> AT5G26692.1 | Symbols: | Putative membrane lipoprotein | chr5:9282479-9283007
FORWARD LENGTH=529
Length=529
Score = 355 bits (192), Expect = 1e-97
Identities = 254/284 (89%), Gaps = 4/284 (1%)
Strand=Plus/Plus
Query 1 AAAGAAA-C-TTGTAAGAG-AAAATGACAGGAAACGTGTGTAAGATGATGATGTTGATGG 57
||||||| | ||| ||||| |||||||| |||||| ||| ||||||||||||||||||||
Sbjct 34 AAAGAAATCTTTG-AAGAGAAAAATGACGGGAAACATGTATAAGATGATGATGTTGATGG 92
Query 58 CATTGATAATGATGGCATGTGGTTTACAAGCATGCAATGGAACGAATTTTGATGAATTCA 117
|||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||
Sbjct 93 CATTGATAATGATGACATGTGGTTTACAAGCATGCAATGCAACGAATGTTGATGAAAGCA 152
Query 118 AGCCAGATTCAAGATTTGTGTGCTTCAAAAACTGTTCTATAAGTTGTGGCAAACAAAACA 177
|||||||| ||| | ||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 153 AGCCAGATCCAAAACTTGAGTGCTTCAAAAACTGTTCCATAAGTTGTGGCAAACAAAACC 212
Query 178 AACCATGTTACCAAGATTGTTTGACGAAATGTGGTCTCCCACAACGACCTTCAAGATCAA 237
|||| |||||| ||| ||||||||||||||||||||||||| |||| ||||| | |||||
Sbjct 213 AACCTTGTTACGAAGTTTGTTTGACGAAATGTGGTCTCCCAAAACGTCCTTCTACATCAA 272
Query 238 CACCATCATCTTCCCCCACCGCGGCTTAATCTGTTTCCATTTGT 281
|||||||||||||| ||||| |||| |||| ||||||||||||
Sbjct 273 CACCATCATCTTCCTCCACCACGGCGTAATAAGTTTCCATTTGT 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13371221234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5