BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942237

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77480.1 | Symbols:  | Eukaryotic aspartyl protease family p...   135    1e-31


> AT1G77480.1 | Symbols:  | Eukaryotic aspartyl protease family 
protein | chr1:29114558-29117338 REVERSE LENGTH=1736
Length=1736

 Score =  135 bits (73),  Expect = 1e-31
 Identities = 89/97 (92%), Gaps = 0/97 (0%)
 Strand=Plus/Plus

Query  33    CAGGTGTTAGAGGCATTAACTTAGTTTTCTATAGTGGAAGCTCGTACACTTACTTCAATG  92
             ||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct  1012  CAGGTGTCAAAGGCATTAACGTAGTTTTCGATAGTGGAAGCTCGTACACTTACTTCAATG  1071

Query  93    CCGAAGCATACCAAGAGATTCTCGATCTTGTAAGAAA  129
             | |||||||||||||  |||||||||||| |||||||
Sbjct  1072  CAGAAGCATACCAAGCTATTCTCGATCTTATAAGAAA  1108



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5