BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942252

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26749.2 | Symbols:  | C2H2 and C2HC zinc fingers superfamil...   355    2e-97


> AT5G26749.2 | Symbols:  | C2H2 and C2HC zinc fingers superfamily 
protein | chr5:9398015-9399267 REVERSE LENGTH=799
Length=799

 Score =  355 bits (192),  Expect = 2e-97
 Identities = 242/266 (91%), Gaps = 3/266 (1%)
 Strand=Plus/Plus

Query  219  AATTTTTGTCCATTCGGAGATTCTTGCAGATACTTTCACCCTAATAACAATCCAGGAAGC  278
            |||||||| ||||| |||||||||||||||||||| || ||||| |||||| ||||||||
Sbjct  284  AATTTTTGCCCATTTGGAGATTCTTGCAGATACTTCCATCCTAACAACAATACAGGAAGC  343

Query  279  ACAGGATTTGCAAATAATACACAACTTCATGGTGATATGCTTAA-C--CAACACATCGAA  335
            ||||||||  |||||||||||||||||| || ||| |||||||| |  ||||||||| ||
Sbjct  344  ACAGGATTCACAAATAATACACAACTTCGTGTTGACATGCTTAACCAACAACACATCCAA  403

Query  336  GGAAGTACCTTAAACCGTGATTATGTTAGTGGGAGACCAGGAGCTGGTTGGTTTGATCTT  395
            |||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct  404  GGAAGTACTTTAAACCGTGATTTTGTTAGTGGGAGACCAGGAACAGGTTGGTTTGATCTT  463

Query  396  CCGCCATCTCTGAAACCGCCTCCTGAGCATGGCTATCCTCAGCTTCCCTTCATAGACTGG  455
            |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  464  CCGCCATCGCTAAAACCGCCTCCTGAGCAAGGCTATCCTCAGCTTCCCTTCATAGACTGG  523

Query  456  GGATAGAGATAAATTCTCTGAGTAAT  481
            ||||||| ||||||||||||| ||||
Sbjct  524  GGATAGATATAAATTCTCTGAATAAT  549


 Score =  351 bits (190),  Expect = 3e-96
 Identities = 209/218 (96%), Gaps = 1/218 (0%)
 Strand=Plus/Plus

Query  1    TCGTCTTCATCGCCAGAAAGATGCCGTCGGGGAAATATTACTGTGATTACTGCGACAAAG  60
            ||||| |||||||| | |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct  10   TCGTCGTCATCGCC-GGAAGATGCCGTCGGGGAAATATTACTGTGATTATTGCGAGAAAG  68

Query  61   AGTTTCAAGACACTCAAGTAGCAAGAAAACGCCATCTTCAAAGCAAACCTCATCTTCGAG  120
            ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct  69   AGTTTCAAGACACTCAAGTCGCTAGAAAACGCCATCTTCAAAGCAAACCTCATCTTCGAG  128

Query  121  CTAAAGCCCTTTGGTACAGTTCTTCTTCCTCAGATCTTATTAATCCACAAGTCTCCAATT  180
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  129  CTAAAGCCCTTTGGTACAGTTCTTCTTCCTCAGATCTTGTTAATCCACAAGTCTCCAATT  188

Query  181  TTGCGACGAAAGGTCTGTGCAATCGATTCATTACCTCG  218
            |||||||||||||||| |||||||||||||||||||||
Sbjct  189  TTGCGACGAAAGGTCTCTGCAATCGATTCATTACCTCG  226



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5