BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942261

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26805.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   619    7e-177


> AT5G26805.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G78640.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr5:9427543-9428067 FORWARD LENGTH=525
Length=525

 Score =  619 bits (335),  Expect = 7e-177
 Identities = 445/497 (90%), Gaps = 12/497 (2%)
 Strand=Plus/Plus

Query  19   CAAACATGATCAAATCATTGTTCTACACCTTCCTTCAAACGATACACCAAGAAGAAAACG  78
            |||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| | 
Sbjct  1    CAAACATGATAAAATCATTGTTCTACACTTTCCTTCAAACGAAACACCAAGAAGAAAGCA  60

Query  79   TCGATTCAACAGATCCTAATTATCCACTATTTCCTCAAGAGGTCGAGATCCGACCCATAG  138
             | | |||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct  61   ACAACTCAAGAGATCCTAATTATCCTCTATTTCCTCAAGAGATCGAGATTCGACCCATAG  120

Query  139  CTTATTTCCCTTGGGAAATCCTCAAGACCCTAACAATTGATGAAATCAT-AGATAAGTTC  197
            |||||||||||||||||||| |||| || |||||||  ||||||||||| || |||||||
Sbjct  121  CTTATTTCCCTTGGGAAATCATCAAAACTCTAACAACCGATGAAATCATAAG-TAAGTTC  179

Query  198  CAACTTCCAATGGAACAAATCCGGGATACTATGCTTAGAGATGTTTCAGAAGATGTCATA  257
            ||||||||||||||| ||||||| ||||| ||||||||| ||| ||||||||| | ||||
Sbjct  180  CAACTTCCAATGGAAAAAATCCGAGATACCATGCTTAGACATGCTTCAGAAGAAGACATA  239

Query  258  TCTCGCACAAATTTTATGATTTGTTGCG-CCGAA-ATATTGGTAAAAGATCTCGATACAA  315
            | ||||||||| ||||||| ||| || | || || |||||||||||||||||||| ||||
Sbjct  240  TATCGCACAAAATTTATGAGTTG-TGAGACC-AATATATTGGTAAAAGATCTCGACACAA  297

Query  316  ACACTATCCATCAAGTTAAATTGTGGAAGCATCCGA-ACGAAAATAATTTTGCACTACAT  374
            ||||||||||||||| |||||||||||||||||| |  |||||||||||||||| | | |
Sbjct  298  ACACTATCCATCAAGGTAAATTGTGGAAGCATCC-ATGCGAAAATAATTTTGCATTGCGT  356

Query  375  AAATCTTGGATCGAAGAATTTGTGAAGAGGAGGAGGCTTGTGGATGGCATGGTGGTTGGT  434
             |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  357  GAATCTTGGATCGAAGAATTTGTGAAGAGGAGGAGGCTTGTGGTTGGCATGGTGGTTGGT  416

Query  435  ATGTATTGGGATTTTGAGGC-TACCATGTTTTGTTTCTCTGTGTTAGAGGGAAG-CAAAT  492
            |||||||||||||||||||| | | ||||||||||||||||||||||| ||||| ||| |
Sbjct  417  ATGTATTGGGATTTTGAGGCCTGC-ATGTTTTGTTTCTCTGTGTTAGATGGAAGACAA-T  474

Query  493  GAGTCAAAAGATTCAAA  509
            || || |||||||||||
Sbjct  475  GAATCTAAAGATTCAAA  491



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24564497883


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5