BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942264
Length=2182
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26830.1 | Symbols: | Threonyl-tRNA synthetase | chr5:94372... 3461 0.0
AT1G17960.1 | Symbols: | Threonyl-tRNA synthetase | chr1:61808... 588 8e-167
> AT5G26830.1 | Symbols: | Threonyl-tRNA synthetase | chr5:9437297-9441779
FORWARD LENGTH=2395
Length=2395
Score = 3461 bits (1874), Expect = 0.0
Identities = 2070/2164 (96%), Gaps = 16/2164 (1%)
Strand=Plus/Plus
Query 1 ACCTTTGACAACGAAGTTTGATGCTCCTTCGTCTTACGGCTCGCTCTATTCGTCGTTTCA 60
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35 ACCTTTGACAACAAATTTTGATGCTCCTTCGTCTTACGGCTCGCTCTATTCGTCGTTTCA 94
Query 61 CAACTTCTTCTTCGTCTCTACAAGCTCTCTTATCATCTTCGTCTGCGTCTTCGTTTTGTA 120
||||||||||||||||||| | | | || | || || | |||||||||||||||
Sbjct 95 CAACTTCTTCTTCGTCTCT---A-C-C-ATT-GC-TC-TC--AT-CGTCTTCGTTTTGTA 142
Query 121 CTGTTCCATCAATGGCAGCTAATCATCCAAAGGATGAAGCGTATCTCTCCGCCGTCATCC 180
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 143 CTGTTCCAACAATGGCAGCTAATCATCCTAAGGATGAAGCGTATCTCTCCGCCGTCATCC 202
Query 181 CCAAACGTATC-AGACTCTTCGAGCAGATCCAAGCGAATCAACTCGAGAATCTTAAGTCT 239
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 CCAAACGTATCAAG-CTTTTCGAGCAGATCCAAGCGAATCAACTCGAGAATCTTAAGTCT 261
Query 240 CTTCCACACGATCCGATCAAGATTACGTTACCAGATGGGAATGTGAAAGAAGGAAAGAAA 299
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 262 CTTCCACACGATCCGATCAAGGTTACGTTACCAGATGGAAATGTGAAAGAAGGAAAGAAG 321
Query 300 TGGGAGACAACTCCAATGGATATCGCTGCTCAGATTTCTAAGGGTTTGGCGAACTCTGCG 359
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 322 TGGGAGACAACTCCGATGGATATCGCTGCTCAGATTTCTAAGGGTTTGGCTAATTCTGCG 381
Query 360 TTGATTTCGGCTGTTGATGATGTTCTTTGGGATATGAGTAGGCCATTGGAAGGTGATTGT 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 382 TTGATTTCGGCTGTTGATGATGTTCTTTGGGATATGAATAGGCCATTGGAAGGTGATTGT 441
Query 420 AAGCTTGAGCTTTTCAAATTTGATAGTGATAAAGGTCGAGATACTCTTTGGCATTCTAGT 479
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 442 AAGCTTGAGCTTTTCAAATTTGATAGCGATAAAGGTCGTGATACTCTTTGGCATTCTAGT 501
Query 480 GCGCACATTCTTGGTCAGGCTCTCGAGCAGGAGTATGGGTGTCAGCTGTGCATAGGACCG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 502 GCGCACATTCTTGGTCAGGCTCTCGAGCAGGAGTATGGGTGTCAGCTGTGCATTGGACCA 561
Query 540 TGTACAACGAGAGGAGAGGGTTTCTACTATGATGGATATTATGGTGCATTGGGCCTGAGC 599
|| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 562 TGCACAACGAGAGGAGAGGGTTTCTACTATGATGGATTTTATGGTGAATTGGGCCTGAGT 621
Query 600 GACAATCACTTTCCTAACATCGAAGCAGGTGCTGCAAAAGCTGCTAAGGAAGCACAACCA 659
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GACAACCACTTTCCTAGCATCGAAGCAGGTGCTGCAAAAGCTGCTAAGGAAGCACAACCA 681
Query 660 TTTGAAAGGATTGAAGTGACGAAGGATCAGGCACTCGAGATGTTTTCTGAGAATAATTTT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TTTGAAAGGATTGAAGTGACGAAGGATCAGGCACTCGAGATGTTTTCTGAGAATAATTTT 741
Query 720 AAGGTTGAAATCATCAATGATTTGCCTGCAGACAAGACCATTACTGTCTACAGATGTGGC 779
||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 742 AAGGTTGAACTCATCAATGGTTTGCCTGCAGACATGACCATTACTGTCTACAGATGTGGC 801
Query 780 CCTTTGGTGGATTTGTGTCGTGGACCGCACATACCAAACACTTCCTTTGTGAAAGCGTTC 839
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 802 CCTTTGGTGGATTTGTGTCGTGGACCGCACATACCAAATACTTCCTTTGTGAAAGCGTTC 861
Query 840 AAATGTTTGAGGGCCTCATCAGCTTACTGGAGGGGTAACAAAGAACGTGAGAGCTTACAG 899
|| |||||||||||||||||||||||||||| |||| ||||||| ||||||||||| |||
Sbjct 862 AAGTGTTTGAGGGCCTCATCAGCTTACTGGAAGGGTGACAAAGACCGTGAGAGCTTGCAG 921
Query 900 AGAGTTTATGGGATATCATATCCTGATCAGAAGCAGCTGAAGAAATATCTCCAATTTCTA 959
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 AGAGTTTATGGGATATCTTATCCTGATCAGAAGCAGCTGAAGAAATATCTCCAATTTCTA 981
Query 960 GAAGAAGCCAAAAAGTATGACCACAGACTATTGGGCCAAAAGCAGGAACTCTTCTTTAGT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GAAGAAGCCAAAAAGTATGACCACAGACTATTGGGCCAAAAGCAGGAACTCTTCTTTAGT 1041
Query 1020 CATCAACTCAGCCCTGGGAGTTATTTCTTCCTTCCACTCGGCACTCGTGTATATAACAGG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 CATCAACTCAGCCCTGGGAGTTATTTCTTCCTTCCACTCGGCACTCGTGTATATAACAGG 1101
Query 1080 TTGATGGACTTCATTAAGAAGCAATACTGGCAAAGGGGTTACACAGAGGTCATGACACCA 1139
|||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||
Sbjct 1102 TTGATGGACTTCATTAAGAACCAATACTGGCACAGGGGTTACACAGAGGTTATTACACCA 1161
Query 1140 AATATGTACAACATGGACCTGTGGAAAACATCTGGACATGCTGATAATTACAAGGATAAT 1199
||||||||||||||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 1162 AATATGTACAACATGGAGTTGTGGCAAACATCCGGACATGCTGACAATTACAAGGATAAT 1221
Query 1200 ATGTTTACGTTTAATATTGAAAATCAAGAGTTCGGGCTCAAACCTATGAATTGTCCTGGT 1259
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1222 ATGTTTACGTTTAATATTGAGAAGCAAGAGTTCGGGCTCAAACCTATGAATTGTCCTGGT 1281
Query 1260 CACTGCTTGATATTCCAGCATAGGGTTCGCTCTTATAGAGAGTTACCTATGAGACTGGCT 1319
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1282 CACTGCTTGATATTCCAGCATAGGGTTCGCTCATATAGAGAGTTACCTATGAGACTGGCC 1341
Query 1320 GACTTTGGAGTGTTACACCGCAATGAGGCAAGTGGAGCACTTAGTGGGTTGACTCGCGTC 1379
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1342 GACTTTGGAGTGTTACACCGCAATGAGGCAAGTGGAGCACTTAGTGGATTGACTCGTGTC 1401
Query 1380 CGACGGTTCCAGCAGGATGATGCACACATCTTCTGTACAACAGAACAGGTTAAGG-ATGA 1438
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||
Sbjct 1402 CGACGGTTCCAGCAGGATGATGCACACATATTCTGTACAACGGAACAGGTTAAGGGA-GA 1460
Query 1439 AGTGCAGGGTGTGTTGGAGTTCATTGACTATGTGTACAAAGTTTTTGGGTTTACCTATGA 1498
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1461 AGTGCAGGGTGTGTTGGAGTTCATTGACTACGTGTACAAAGTTTTCGGGTTTACCTATGA 1520
Query 1499 GCTAAAACTTTCAACGAGGCCAGAGAAGTACCTTGGAGAATTGGAAACATGGGATAAAGC 1558
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1521 GCTAAAACTTTCAACGAGGCCAGAGAAGTACCTTGGAGATTTGGAAACATGGGATAAAGC 1580
Query 1559 TGAAGCGGATCTCAAAGAAGCTATAGAAGCTTTTGGAAAGCCATTAGTGTTGAATGAAGG 1618
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1581 TGAAGCGGATCTCAAAGAAGCTATAGAAGCTTTTGGAAAGCCATTAGTGTTGAACGAAGG 1640
Query 1619 AGATGGTGCATTTTATGGCCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAA 1678
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1641 AGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAA 1700
Query 1679 ATTCCAGTGTGCTACTTTACAGCTTGATTTTCAACTTCCGATTCGCTTCAACTTGGAATA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 ATTCCAGTGTGCTACTTTACAGCTTGATTTTCAACTTCCGATTCGCTTCAACTTGGAATA 1760
Query 1739 CGCAGCTGAGGATGAAGCGAAGAAGGGTAAACCTGTAATGATACATAGAGCCGTGTTGGG 1798
||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 1761 CGCAGCTGAGGATGAAGCGAAAAAGAGTAGACCTGTAATGATACATAGAGCCGTGTTGGG 1820
Query 1799 ATCTGTGGAACGTATGTTTGCCATATTGTTGGAGCATTACAAAGGAAAATGGCCCTTCTG 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 ATCTGTGGAACGTATGTTTGCCATATTGTTGGAGCATTACAAAGGAAAATGGCCCTTCTG 1880
Query 1859 GATTAGTCCGCGCCAGGCCATAGTTTGTCCTATATCAGAGAAATCTCAGAAATATGCAGA 1918
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1881 GATTAGTCCGCGACAGGCCATAGTTTGTCCTATATCAGAGAAATCTCAGCAATATGCAGA 1940
Query 1919 AAAGGTGCAAAAGGAAATTCATGATGCTGGGTTCTATATCGATGCGGACTTAACAGACAG 1978
|||||| |||||| ||||| | ||||||||||||||| | ||||| ||||||||||||||
Sbjct 1941 AAAGGTTCAAAAGCAAATTAAAGATGCTGGGTTCTATGTTGATGCTGACTTAACAGACAG 2000
Query 1979 AAAGATAGATAAAAAGGTGCGAGAAGCTCAGCTTGCACAGTACAACTACATTCTGGTCGT 2038
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2001 AAAGATAGATAAAAAGGTGCGAGAAGCTCAGCTTGCTCAGTACAACTACATTCTGGTCGT 2060
Query 2039 GGGTGAAACTGAGGCTGCTACAGGACAGGTGAGTGTTCGTTTGCGAGACAGTGCAGCCCA 2098
||||||||| || ||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 2061 GGGTGAAACAGAAGCTGCTACAGGACAGGTGAGTGTTCGTGTGAGAGACAATGCAGCCCA 2120
Query 2099 CTCTGTGAAGAGCATTGAGGATTTGCTAGAAGAATTCAAGGCCAAGATTGCCGAATTTGT 2158
||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 2121 CTCCGTGAAGAGCATTGAGGATTTGCTGGAAGAATTCAAGGCCAAGACTGCCGAATTTGT 2180
Query 2159 ATGA 2162
||||
Sbjct 2181 ATGA 2184
> AT1G17960.1 | Symbols: | Threonyl-tRNA synthetase | chr1:6180896-6183806
REVERSE LENGTH=1565
Length=1565
Score = 588 bits (318), Expect = 8e-167
Identities = 646/798 (81%), Gaps = 47/798 (6%)
Strand=Plus/Plus
Query 1302 TTACCTATGAGACTGGCTGACTTTGGAGTGTTACACCGCAATGAGGCA-AGTGGAGCACT 1360
||||| || ||| |||| || ||||||||||||||||| ||||||| | |||||||||||
Sbjct 577 TTACCCATTAGAATGGCCGAATTTGGAGTGTTACACCGAAATGAGG-ACAGTGGAGCACT 635
Query 1361 TAGTGGGTTGACTCGCGTCCGACGG-TTCCAGCAGGATGATGCACACATCTTCTGTACAA 1419
| |||| |||| || ||||||||| || | ||||||||||||||||| ||||||| |
Sbjct 636 TGGTGGAATGACCCGTGTCCGACGGTTTGTA-CAGGATGATGCACACATATTCTGTAGAG 694
Query 1420 CAGAACAGGTTAAGGATGAAGTGCAGGGTGTGTTGGAGTTCATTGACTATGTGTACA-AA 1478
|| |||||| |||| |||||| ||||||||||||| |||||||||||||| |||| ||
Sbjct 695 TGGATCAGGTTGAGGAAGAAGTGAAGGGTGTGTTGGATTTCATTGACTATGTTTACAGAA 754
Query 1479 GTTTTTGGGTTTACCTATGAGCTAAAACTTTCAACGAGGCCAGAGAAGT-ACCTTGGAGA 1537
| ||||||||||||||||| |||| ||||||||||||||| || | | || |||||||
Sbjct 755 -TATTTGGGTTTACCTATGAACTAACGCTTTCAACGAGGCCAAAGGA-TCACATTGGAGA 812
Query 1538 ATTGGAAACATGGGATAAAGCTGAAGCGGATC-TCAAAGAAGCTATAGAAGCTTTTGGAA 1596
||||||||||||| |||||||||| |||| | ||| ||||| |||| | ||||||||
Sbjct 813 TTTGGAAACATGGGCTAAAGCTGAAAATGATCTTGAAA-AAGCTCTAGATGATTTTGGAA 871
Query 1597 AGCCATTAGTGT-TGAATGAAGGAGATGGTGCATTTTATGGCCCAAAGATAGACATCACA 1655
|||||| || | | || |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 872 AGCCATGGGT-TATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACA 930
Query 1656 GTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGCTTGATTTTCAACTT 1715
|| |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 931 GTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGCTTGATTTTCAACTT 990
Query 1716 CCGA-TTCGCTTCAA-CTTGGAATACGC-A-GCTGAGGATGAAGCGAAGAAGG-GTAAAC 1770
||| || ||||||| || | ||||| | | | ||| | || |||| | || | | |
Sbjct 991 CCGGCTT-GCTTCAAACT-GAAATAC-CTAAG-TGAAAAA-AA-CGAA-ATGGAGGCA-C 1042
Query 1771 CTGTAATGATACATAGAGCCGTGTTGGGATCTGTGGAACGTATGTTTGCCATATTGTTGG 1830
|||| ||||||||||| || |||||||||||| | || ||||||||||||||||||||||
Sbjct 1043 CTGTGATGATACATAGTGCGGTGTTGGGATCTATTGAGCGTATGTTTGCCATATTGTTGG 1102
Query 1831 AGCATTACAAAGGAAAATGGCCCTTCTGGATTAGTCCGCGCCAGGCCATAGTTTG-TC-C 1888
| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||| || |
Sbjct 1103 AACATTACAAAGGAATTTGGCCCTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTCTC 1162
Query 1889 TATATCAGAGAAATCTCAGAAA-TATGCAGAAA-AGGTGCAAAAGGAAATTCATGATG-C 1945
| | |||||| | | | || ||||| ||| |||| ||||| | ||| |||| | |
Sbjct 1163 T-T-TCAGAGGATTGT-AGTTCCTATGCC-AAACAGGTACAAAAACAGATTAATGAAGTC 1218
Query 1946 TGGGTTCTATATCGATGCGGACTTAACAG--ACAGAAAGA-TA-GATAAAAAGGTG-CGA 2000
|||| |||| | ||| || | || || |||||| | | | |||||||||| | |
Sbjct 1219 -GGGTACTATGTTGATATTGA-TGAA-AGTGACAGAA-GCCTCCG-TAAAAAGGTGGC-A 1272
Query 2001 GAAGCTCAGCTTGCAC-AGTACAACTACATTCTGGTCGTGGGTGAAACTGAGGCTGCTAC 2059
|| |||| | ||||| | ||||||||||| |||||||| ||| ||| |||| ||| ||
Sbjct 1273 GATGCTCGGGATGCACCA-TACAACTACATACTGGTCGTAGGTCAAAAAGAGGTTGCAAC 1331
Query 2060 AGGACAGGTGAGTGTTCG 2077
|||||||||| |||||
Sbjct 1332 TGGACAGGTGACAGTTCG 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108232375020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5