BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942271
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25757.1 | Symbols: | RNA polymerase I-associated factor PA... 675 0.0
AT5G25754.1 | Symbols: | RNA polymerase I-associated factor PA... 675 0.0
> AT5G25757.1 | Symbols: | RNA polymerase I-associated factor
PAF67 | chr5:8965245-8967504 REVERSE LENGTH=1859
Length=1859
Score = 675 bits (365), Expect = 0.0
Identities = 434/467 (93%), Gaps = 5/467 (1%)
Strand=Plus/Plus
Query 256 AGCATGACAAGCATGGCCTTGAACAGTTCACTGCCACTGATGGCTACGATTACAGCGGTG 315
||||||||||| ||||||||| ||||||||| |||||||||||||||| ||||||||
Sbjct 631 AGCATGACAAGGATGGCCTTG---AGTTCACTGAGACTGATGGCTACGATTTCAGCGGTG 687
Query 316 GAAGTAACGTCTTGAAGGTCCTCGGTTACTTCAGCATGGTCGGTCTCTTGCGTGTTCACT 375
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GCAGCAACGTCTTGAAGGTCCTCGGTTACTTCAGCATGGTCGGTCTCTTGCGTGTTCACT 747
Query 376 GCCTCCTCGGTGACTACCACACTGCTCTCAAATGGTTGCAGCCCATTGACATCACTCAGC 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 GCCTCCTCGGTGACTACCACACTGCTCTCAAATGGTTGCAGCCCATTGACATCACTCAGC 807
Query 436 AAGGTCTTTACACCAGTGTCATTGGATGCCATATCGCTACCATCTATCAATATGGATTTG 495
|||| ||||||||||||||||||| |||||||||||||| ||||| || ||||||||||
Sbjct 808 CAGGTGTTTACACCAGTGTCATTGGTTGCCATATCGCTACTATCTACCACTATGGATTTG 867
Query 496 CCAACCTTATGTTGCG-ACGCTATCTAGATTCTGTTCGTGAATTCAACAAGATTCTCCTC 554
||| |||||||||||| | | ||| | ||| |||||||||| ||||||||||||||||||
Sbjct 868 CCACCCTTATGTTGCGGAGG-TATGTCGATGCTGTTCGTGAGTTCAACAAGATTCTCCTC 926
Query 555 TACATTTTCAAGACTAACCAGTACCATCAAAAGTCACCTCAGTACGAGCAATTACTCAAG 614
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 TACATTTTCAAGACTAAGCAGTACCATCAAAAGTCACCTCAGTACGAGCAATTACTCAAG 986
Query 615 AAGAATGAGCAGATGTATGCATTACTTGCTCTTTGCCTCTCCCTCTGCCCTCAAACTAAA 674
||||||||||||||||| || || |||||||| | |||||||||||||||||||||||||
Sbjct 987 AAGAATGAGCAGATGTACGCTTTGCTTGCTCTCTCCCTCTCCCTCTGCCCTCAAACTAAA 1046
Query 675 CTCGTTGACGATTCTGCCAGCTCTCAGTTGCGAGACAAGTATGGTGA 721
||||||||||| |||| || ||||||| |||||||||||||||||||
Sbjct 1047 CTCGTTGACGAGTCTGTCAACTCTCAGCTGCGAGACAAGTATGGTGA 1093
Score = 394 bits (213), Expect = 9e-109
Identities = 250/266 (94%), Gaps = 9/266 (3%)
Strand=Plus/Plus
Query 1 TCTGTCTTCTATACCGTGAGATGT-G----G----TTGTATGCGAGGTTATCTCCTACGT 51
|||||||||| ||||||||||||| | | |||||||||||||| ||||| ||||
Sbjct 292 TCTGTCTTCTGTACCGTGAGATGTGGTTTCGACATTTGTATGCGAGGTTGTCTCCGACGT 351
Query 52 TGAAGCAGAGGATTGATTCTTATGACAACTATTGCAGCCTCTTTCAGGTGGTGTTGCACG 111
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 352 TGAAGCAGAGGATTGATTCTTATGACAACTATTGCAGCCTCTTTCAGGTTGTGTTGCACG 411
Query 112 GCGTAGTGAATATGCAGTTGCCGAACCAGTGGTTGTGGGATATGGTGGATGAGTTTGTCT 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GCGTAGTGAATATGCAGTTGCCGAACCAGTGGTTGTGGGATATGGTGGATGAGTTTGTCT 471
Query 172 ACCAGTTCCAAAGTTTCTGTCAGTTCAGAGCAAAGCTCAAGAACAAAACAGAGCAGGAGA 231
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 472 ACCAGTTCCAAAGTTTCTGTCAATTCAGAGCAAAGCTCAAGAACAAAACAGAGGAGGAGA 531
Query 232 TTGCATTGCTCAGACAGCATGATAAG 257
||||||||||||||||||| ||||||
Sbjct 532 TTGCATTGCTCAGACAGCACGATAAG 557
Score = 235 bits (127), Expect = 6e-61
Identities = 218/256 (85%), Gaps = 29/256 (11%)
Strand=Plus/Plus
Query 720 GAGGCCTTTGGTATTTTTGATGAGCTCTTCTCTTATGCATCCCCCAAGTTTATCACCCCT 779
|||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1125 GAGGCCTTTGGTATTTATGATGAGCTCTTCTCTTACGCATGCCCCAAGTTTATCACCCCT 1184
Query 780 TCCG---CACCAAGTTTCGAGGAACCTCTTGTCAATTACAATCAG--T---T---G---- 824
|||| |||||| ||||||||||||||||||||||||||||||| | | |
Sbjct 1185 TCCGCACCACCAACTTTCGAGGAACCTCTTGTCAATTACAATCAGGATGCATACAGGCTT 1244
Query 825 -A----A-GATGTTCCTTTATGAGGTAAAGCAGCGGCAGCTGTTGTCGGGAGTGCGGACA 878
| | |||||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 1245 CAGCTGAAGATGTTCCTTTACGAGGTAAAGCAGCAGCAGCTCTTGTCGGGAGTGCGGAC- 1303
Query 879 CGGACATTTC-TGAAAGTCTACTCCTCCATTTCTCTTGCTAAGCTCGCAAACTACTTGGA 937
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1304 ------TTTCCTGAAAGTCTACTCCTCCATTTCTCTTGCTAAGCTCGCAAACTACATGGA 1357
Query 938 AGTCGATGAGCCCACT 953
||| ||||||||||||
Sbjct 1358 AGTTGATGAGCCCACT 1373
> AT5G25754.1 | Symbols: | RNA polymerase I-associated factor
PAF67 | chr5:8953451-8955790 FORWARD LENGTH=1937
Length=1937
Score = 675 bits (365), Expect = 0.0
Identities = 434/467 (93%), Gaps = 5/467 (1%)
Strand=Plus/Plus
Query 256 AGCATGACAAGCATGGCCTTGAACAGTTCACTGCCACTGATGGCTACGATTACAGCGGTG 315
||||||||||| ||||||||| ||||||||| |||||||||||||||| ||||||||
Sbjct 700 AGCATGACAAGGATGGCCTTG---AGTTCACTGAGACTGATGGCTACGATTTCAGCGGTG 756
Query 316 GAAGTAACGTCTTGAAGGTCCTCGGTTACTTCAGCATGGTCGGTCTCTTGCGTGTTCACT 375
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GCAGCAACGTCTTGAAGGTCCTCGGTTACTTCAGCATGGTCGGTCTCTTGCGTGTTCACT 816
Query 376 GCCTCCTCGGTGACTACCACACTGCTCTCAAATGGTTGCAGCCCATTGACATCACTCAGC 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GCCTCCTCGGTGACTACCACACTGCTCTCAAATGGTTGCAGCCCATTGACATCACTCAGC 876
Query 436 AAGGTCTTTACACCAGTGTCATTGGATGCCATATCGCTACCATCTATCAATATGGATTTG 495
|||| ||||||||||||||||||| |||||||||||||| ||||| || ||||||||||
Sbjct 877 CAGGTGTTTACACCAGTGTCATTGGTTGCCATATCGCTACTATCTACCACTATGGATTTG 936
Query 496 CCAACCTTATGTTGCG-ACGCTATCTAGATTCTGTTCGTGAATTCAACAAGATTCTCCTC 554
||| |||||||||||| | | ||| | ||| |||||||||| ||||||||||||||||||
Sbjct 937 CCACCCTTATGTTGCGGAGG-TATGTCGATGCTGTTCGTGAGTTCAACAAGATTCTCCTC 995
Query 555 TACATTTTCAAGACTAACCAGTACCATCAAAAGTCACCTCAGTACGAGCAATTACTCAAG 614
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 TACATTTTCAAGACTAAGCAGTACCATCAAAAGTCACCTCAGTACGAGCAATTACTCAAG 1055
Query 615 AAGAATGAGCAGATGTATGCATTACTTGCTCTTTGCCTCTCCCTCTGCCCTCAAACTAAA 674
||||||||||||||||| || || |||||||| | |||||||||||||||||||||||||
Sbjct 1056 AAGAATGAGCAGATGTACGCTTTGCTTGCTCTCTCCCTCTCCCTCTGCCCTCAAACTAAA 1115
Query 675 CTCGTTGACGATTCTGCCAGCTCTCAGTTGCGAGACAAGTATGGTGA 721
||||||||||| |||| || ||||||| |||||||||||||||||||
Sbjct 1116 CTCGTTGACGAGTCTGTCAACTCTCAGCTGCGAGACAAGTATGGTGA 1162
Score = 394 bits (213), Expect = 9e-109
Identities = 250/266 (94%), Gaps = 9/266 (3%)
Strand=Plus/Plus
Query 1 TCTGTCTTCTATACCGTGAGATGT-G----G----TTGTATGCGAGGTTATCTCCTACGT 51
|||||||||| ||||||||||||| | | |||||||||||||| ||||| ||||
Sbjct 361 TCTGTCTTCTGTACCGTGAGATGTGGTTTCGACATTTGTATGCGAGGTTGTCTCCGACGT 420
Query 52 TGAAGCAGAGGATTGATTCTTATGACAACTATTGCAGCCTCTTTCAGGTGGTGTTGCACG 111
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 TGAAGCAGAGGATTGATTCTTATGACAACTATTGCAGCCTCTTTCAGGTTGTGTTGCACG 480
Query 112 GCGTAGTGAATATGCAGTTGCCGAACCAGTGGTTGTGGGATATGGTGGATGAGTTTGTCT 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCGTAGTGAATATGCAGTTGCCGAACCAGTGGTTGTGGGATATGGTGGATGAGTTTGTCT 540
Query 172 ACCAGTTCCAAAGTTTCTGTCAGTTCAGAGCAAAGCTCAAGAACAAAACAGAGCAGGAGA 231
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 541 ACCAGTTCCAAAGTTTCTGTCAATTCAGAGCAAAGCTCAAGAACAAAACAGAGGAGGAGA 600
Query 232 TTGCATTGCTCAGACAGCATGATAAG 257
||||||||||||||||||| ||||||
Sbjct 601 TTGCATTGCTCAGACAGCACGATAAG 626
Score = 235 bits (127), Expect = 6e-61
Identities = 218/256 (85%), Gaps = 29/256 (11%)
Strand=Plus/Plus
Query 720 GAGGCCTTTGGTATTTTTGATGAGCTCTTCTCTTATGCATCCCCCAAGTTTATCACCCCT 779
|||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1194 GAGGCCTTTGGTATTTATGATGAGCTCTTCTCTTACGCATGCCCCAAGTTTATCACCCCT 1253
Query 780 TCCG---CACCAAGTTTCGAGGAACCTCTTGTCAATTACAATCAG--T---T---G---- 824
|||| |||||| ||||||||||||||||||||||||||||||| | | |
Sbjct 1254 TCCGCACCACCAACTTTCGAGGAACCTCTTGTCAATTACAATCAGGATGCATACAGGCTT 1313
Query 825 -A----A-GATGTTCCTTTATGAGGTAAAGCAGCGGCAGCTGTTGTCGGGAGTGCGGACA 878
| | |||||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 1314 CAGCTGAAGATGTTCCTTTACGAGGTAAAGCAGCAGCAGCTCTTGTCGGGAGTGCGGAC- 1372
Query 879 CGGACATTTC-TGAAAGTCTACTCCTCCATTTCTCTTGCTAAGCTCGCAAACTACTTGGA 937
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1373 ------TTTCCTGAAAGTCTACTCCTCCATTTCTCTTGCTAAGCTCGCAAACTACATGGA 1426
Query 938 AGTCGATGAGCCCACT 953
||| ||||||||||||
Sbjct 1427 AGTTGATGAGCCCACT 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50987659205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5