BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942280
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26940.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1515 0.0
> AT5G26940.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr5:9480740-9482769 FORWARD
LENGTH=1196
Length=1196
Score = 1515 bits (820), Expect = 0.0
Identities = 936/993 (94%), Gaps = 4/993 (0%)
Strand=Plus/Plus
Query 1 AGAGAAAGAGAGAGGATCTAATGTGTGTCTCAATCTCGCAAGTCTCTAGATTCAGAATCC 60
||||| || |||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 104 AGAGAGAGCGAGAGGATCTGATGTGTATCTCAATCTCGCAAGTCTCTAGATTGAGAATCC 163
Query 61 ATTCATTTGGAAGTTCTTGCTGTGAACGTGTTCATGGTTGGATCAAGAACAGCTCAAGCT 120
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 164 ATTCATTTGGAAGTTCTTGCTGTGAGCGTGTTCATGGATGGATCAAGAACAGCTCTAGCT 223
Query 121 TGAAGCTGCTTGATGTTAGAGCTTCCTCGGTTGATGGCAAAGCAAGATGGATCAGACGGA 180
||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |
Sbjct 224 TGAAGCTGCTTGATGTTAGAGCTTCTTCTGTTGATGGTAAAGCAAGATGGATCAGACGTA 283
Query 181 ACGTGAGTACAACTACACAAGGTAGTAGAGGCAACACTAAGAGCAGTGTGTTGGGAGGAA 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 284 ACGTGAGTACAACTACACAAGGTAGTAGAAGCAACACTAAGAGCAGTGTGTTGGGAGGAA 343
Query 241 CAGTTCCTCTAACTAGGATTATAGATGAAGAGAGTAGAACCAAGGTACAGCCTTTTGGTA 300
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CAGTTCCTGTAACCAGGATTATAGATGAAGAGAGTAGAACCAAGGTACAGCCTTTTGGTA 403
Query 301 ATCTTCAGCAACGGCTTGCGCAAGATAAAGATCTGCCTAAGCTCCTCACGGTTATTGTCT 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 404 ATCTTCAGCAACGGCTTGCGCAAGATAAAGATCTGTCTAAGCTCCTCACGGTTATAGTCT 463
Query 361 CTGATCTTGAGACAACTGGCTTGCATCGGAAGAGGGAGCGGATAATTGAAATTGCAGCTC 420
||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||
Sbjct 464 CTGATCTTGAGACAACTGGTTTGCATCGGAAAAATGAGCGGATAATTGAAATTGCAGCTC 523
Query 421 AGGATTTAGCTGGTGGTGGGTACAGCACATTTCAGACTCTCGTCAATCCGGGTGATGTTC 480
||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 524 AGGATATAGCTGGTGGTGGGTACAGCACATTTCAGACTCTTGTCAACCCGGGTGTTGTTC 583
Query 481 CTGTAACTAATACAGATATCCATGGAATCAGGACTGATATGGTCTGTCGACCCGAGGTTC 540
|| ||||||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 584 CTATAACTAACGCACATATCCATGGAATCAGGAATGATATGGTCTGTCGACCCGAGGTTC 643
Query 541 CAAGGATGGAAGAGCTGATTCCGATATTTCTGCGGTATGTTGAGAGTCGACAGAAGCCTG 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 644 CAAGGATGGAAGAGCTGATACCGATATTTCTGCGGTATGTTGAGAGTCGACAGAAGCCTG 703
Query 601 GAGGTTATGTGATGTTAGTTGCACACAACGGCAAATCATTTGACTTCCGGTTTTTGATCA 660
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 704 GAGGTTATGTGATGTTAGTTGCACACAACGGCAAATCATTTGACTTCCAGTTTTTGATCA 763
Query 661 ACGAGTTTAACCGTTGTTCTTATGAGATTCCTCATAATTGGTTGTTACTCGACTCGCTCC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 ACGAGTTTAACCGTTGTTCTTATGAGATTCCTCATAATTGGTTGTTACTCGACTCGCTCC 823
Query 721 CACTCGGTAGAGAGCACATGAAGTCTTTAGACCCAACGGTTAAGCCAAAAGCATCGTTAA 780
|||||| ||||||| ||||||||||| |||| ||||||||||||| || |||||||
Sbjct 824 CACTCGCTAGAGAGAACATGAAGTCTGTAGAGCCAACGGTTAAGCTAAGTTCATCGTTGG 883
Query 781 AAGTTCTT-CAAGAAC-ACTATAGTCTTACAAGGGAAGGTGACGCTCACAGAGCTTTGTC 838
||| ||| | || | ||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 884 AAGCGCTTGCG-GA-CTACTATAGTCTTACAAGGGAGGGTGATGCTCACAGAGCCTTGTC 941
Query 839 AGATGTGTTACTCTTATCTAAGGTGTTCCAGAAACTCACCATTGATCTCAAGCTCTCACT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 AGATGTGTTACTCTTATCTAAGGTGTTCCAGAAACTCACCATTGATCTCAAGCTCTCACT 1001
Query 899 CTCTGATCTCGTCCTCCGCTGTCAAACTGCATCCGATATCAGTGCTGTCATGGCCAAGAA 958
||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 1002 CTCTGATCTCGTCCTTCGCTGTCACACTGCATCTGATATCAGTGCTGCCATGGCCAAGAA 1061
Query 959 CAAGAAGGCCTGAAACATTTTAGACATAGCTAT 991
|||||||||||||| ||||||||||||||||||
Sbjct 1062 CAAGAAGGCCTGAAGCATTTTAGACATAGCTAT 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48526186002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5