BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942284
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26980.1 | Symbols: SYP41, ATSYP41, ATTLG2A | syntaxin of pl... 1615 0.0
AT3G05710.2 | Symbols: SYP43, ATSYP43 | syntaxin of plants 43 |... 878 0.0
AT4G04740.2 | Symbols: CPK23 | calcium-dependent protein kinase... 100 2e-20
> AT5G26980.1 | Symbols: SYP41, ATSYP41, ATTLG2A | syntaxin of
plants 41 | chr5:9488148-9490807 REVERSE LENGTH=1748
Length=1748
Score = 1615 bits (874), Expect = 0.0
Identities = 951/989 (96%), Gaps = 1/989 (0%)
Strand=Plus/Plus
Query 6 AAATTTTCGACGATCATGGCGACGAGGAATCGTACGTTGCTGTTTAGGAAGTACAGAAAC 65
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 AAATTTT-GACGATCATGGCGACGAGGAATCGTACGTTGCTGTTTAGGAAGTACAGAAAC 248
Query 66 TCTCTGAGGAGCGTCAGAGCTCCATTGTCGTCATCTTCATTGACGGGAACACGATCCGGC 125
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 TCTCTGAGAAGCGTCAGAGCTCCATTGTCGTCATCTTCATTGACGGGAACACGATCCGGC 308
Query 126 GGCGTTGGTCCGGTTATCGAAATGGCGACTACTTCGTTATTGAATCCGAATCGCTCTTAT 185
|||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 309 GGCGTTGGTCCGGTGATCGAGATGGCGAGTACTTCGTTATTGAATCCGAATCGCTCTTAC 368
Query 186 ACTCCTGTTAGTACCGAAGATCCTGGAACTTCTAGTAAAGGTGCGATAACAGTGGGATTA 245
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 369 GCTCCTATTAGTACCGAAGATCCTGGAACTTCTAGTAAAGGTGCGATAACAGTGGGCTTA 428
Query 246 CCACCAGCTTGGGTTGATGTATCTGAGGAGATATCGGTGAACATACAGCGAGCAAGGACT 305
|||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||
Sbjct 429 CCACCAGCTTGGGTTGATGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACT 488
Query 306 AAAATGGCGGAGTTGGGAAAGGCTCATGCTAAGGCGTTAATGCCATCGTTTGGTGATGGT 365
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 489 AAAATGGCTGAGTTGGGAAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGT 548
Query 366 AAAGAAGATCAACATAATATTGAGTCTTTGACGCAGGAGATAACTTTTCTATTGAAGAAG 425
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 549 AAAGAAGATCAACATAATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAG 608
Query 426 TCTGAGAAGCAACTTCAGAGGCTTTCTGCGGCTGGGCCTTCTGAAGATTCGAATGTTAGG 485
||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 609 TCTGAGAAGCAACTTCAGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGG 668
Query 486 AAGAATGTGCAGCGGTCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTCCGCAAA 545
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 669 AAAAATGTGCAGCGGTCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAA 728
Query 546 AAACAGTCAACATATTTGAAACGCTTGAGACAGCAAAAAGAGGATGGGGTGGATTTAGAG 605
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 729 AAACAGTCAACATATTTGAAACGCTTGAGGCAGCAAAAAGAGGATGGGATGGATTTAGAG 788
Query 606 ATGAATCTGAGCAGAAACAGATATAGACCTGAAGAGGATGACTTTGACGATATGTTAAAC 665
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 789 ATGAATCTGAGCAGAAACAGATATAGACCTGAAGAGGATGACTTTGGCGATATGTTAAAC 848
Query 666 GAGCATCAGATGTCCAAGATAAAAAAGAGCGAGGAAGTATCGGTAGAGAGGGAGAAAGAG 725
|||||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 849 GAGCATCAGATGTCAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAG 908
Query 726 ATACAACAGGTTGTAGAATCAGTAAACGATCTTGCTCAAATCATGAAGGATCTTTCTGCA 785
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 909 ATACAACAGGTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCA 968
Query 786 CTTGTGATAGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCT 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 CTTGTGATAGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCT 1028
Query 846 ACTACCGTTGAAGATGGCCTCAAACAACTGCAGAAGGCAGAGCGAACGCAGAGACATGGA 905
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1029 ACTACTGTTGAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGA 1088
Query 906 GGGATGGTGAAGTGCGCATCTGTCCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTA 965
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1089 GGTATGGTGAAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTA 1148
Query 966 ATCCTTAAGGAAATATTCTTGTGATCGGA 994
||||| |||||||||||||||||||||||
Sbjct 1149 ATCCTCAAGGAAATATTCTTGTGATCGGA 1177
> AT3G05710.2 | Symbols: SYP43, ATSYP43 | syntaxin of plants 43
| chr3:1685003-1687558 FORWARD LENGTH=1584
Length=1584
Score = 878 bits (475), Expect = 0.0
Identities = 834/1003 (83%), Gaps = 41/1003 (4%)
Strand=Plus/Plus
Query 21 ATGGCGACGAGGAATCGTACGTTGCTGTTTAGGAAGTACAGAAACTCTCTGAGGAGCG-T 79
|||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||| |
Sbjct 260 ATGGCGACTAGGAATCGTACGCTGTTGTTTAGGAAGTACAGAAACTCTCTCAGGAGCGTT 319
Query 80 CAGAGCTCC-AT--TGTCGTCATC-T--T---CATTGACGG-GAAC-A--CGAT--CC-G 123
| | ||||| || |||||| || | | ||||||||| | || | || | || |
Sbjct 320 C-GTGCTCCAATGGGGTCGTCTTCGTCGTCGACATTGACGGAGCACAATTCGTTGACCGG 378
Query 124 -GC----GGC-G-TT-GGTCCGGTTATCGAAATGGCGA-CTACTTCGT-TATTGAATCCG 173
|| | | || || ||||| ||||| ||||||| | || || | ||||||||||
Sbjct 379 AGCTAAATCCGGATTAGGCCCGGTGATCGAGATGGCGAGC-ACGTC-TCTATTGAATCCA 436
Query 174 AATCGCTCTTATACTCCTGTTAGTACCGAAGATCCT-GGAACTTCTAGTAAAGGTGCGAT 232
||||| |||||| |||| || |||||||| |||||| |||| ||| |||| |||| | ||
Sbjct 437 AATCGGTCTTATGCTCCAGTCAGTACCGAGGATCCTGGGAA-TTCGAGTAGAGGTACAAT 495
Query 233 AACAGTGGGATTACCACCAGCTTGGGTTGATGTATCTGAGGAGATATCGGTGAACATACA 292
||||||||| |||||||||| |||||||||||||||||||||||| || || |||| ||
Sbjct 496 AACAGTGGGCTTACCACCAGATTGGGTTGATGTATCTGAGGAGATTTCAGTTTACATTCA 555
Query 293 GCGAGCAAGGACTAAAATGGCGGAGTTGGGAAAGGCTCATGCTAAGGCGTTAATGCCATC 352
|| ||||| || |||||||| || ||||||||||||||||| || ||||| ||||| ||
Sbjct 556 ACGTGCAAGAACCAAAATGGCTGAATTGGGAAAGGCTCATGCGAAAGCGTTGATGCCTTC 615
Query 353 GTTTGGTGATGGTAAAGAAGATCAACAT-AATATTGAGTCTTTGACGCAGGAGATAACTT 411
|||||| ||||||||||||||||||||| || || ||| ||||||| || ||| | || |
Sbjct 616 GTTTGGGGATGGTAAAGAAGATCAACATCAA-ATCGAGACTTTGACACAAGAGGTTACCT 674
Query 412 TTCTATTGAAGAAGTCTGAGAAGCAACTTCAGAGGCTTTCTGCGGCTGGGCCTTCTGAAG 471
| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 675 TCCTATTGAAGAAATCTGAGAAGCAACTTCAGAGGCTTTCTGCAGCTGGACCTTCTGAAG 734
Query 472 ATTCGAATGTTAGGAAGAATGTGCAGCGGTCTCTTGCCACTGACCTCCAACTTCTTTCTA 531
|||| ||||| ||||| || || ||||| |||||||| || || |||||| |||||||
Sbjct 735 ATTCAAATGTCAGGAAAAACGTCCAGCGATCTCTTGCTACGGATCTCCAAAACCTTTCTA 794
Query 532 TGGAGCTCCGCAAAAAACAGTCAACATATTTGAAACGCTTGAGAC-AGCAAAAAGAGGAT 590
||||| | ||||| |||||||| |||||||||||||| ||||||| | ||||||||||||
Sbjct 795 TGGAGTTACGCAAGAAACAGTCTACATATTTGAAACGTTTGAGACTA-CAAAAAGAGGAT 853
Query 591 GGGGTGGATTTAGAGATGAATCTGAGCAGAAACAGATATAGACCTGAAGAGGATGACTTT 650
|| | |||||||||||||||||||| | ||| |||||||| | | ||||| |||||||||
Sbjct 854 GGAGCGGATTTAGAGATGAATCTGAACGGAAGCAGATATAAAGCAGAAGATGATGACTTT 913
Query 651 GACGATATGTTAA--AC-GAGCATCAGATGTCCAAGATAAAAAAGAGCGAGGAAGTATCG 707
|| |||||| || | |||||||| ||| ||||||||||||||| |||||| ||||
Sbjct 914 GATGATATGGTATTTAGTGAGCATCAAATGAGCAAGATAAAAAAGAGTGAGGAAATATCA 973
Query 708 GTAGAGAGGGAGAAAGAGATACAACAGGTTGTAGAATCAGTAAACGATCTTGCTCAAATC 767
||||||||||||||||||| ||||||||||| ||||| |||| ||| |||||||| |||
Sbjct 974 ATAGAGAGGGAGAAAGAGATTCAACAGGTTGTTGAATCCGTAAGCGAGCTTGCTCAGATC 1033
Query 768 ATGAAGGATCTTTCTGCACTTGTGATAGATCAGGGTACAATAGTTGATCGGATAGACTAT 827
||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1034 ATGAAGGATCTGTCAGCGCTTGTGATAGACCAGGGTACAATAGTTGATCGGATTGACTAT 1093
Query 828 AATATCGAAAACGTCGCTACTACCGTTGAAGATGGCCTCAAACAACTGCAGAAGGCAGAG 887
|||||| | ||||| |||| ||| || || ||||| |||||||| ||||| ||||| ||
Sbjct 1094 AATATCCAGAACGTTGCTAGTACAGTCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAA 1153
Query 888 CGAACGCAGAGACATGGAGGGATGGTGAAGTGCGCATCTGTCCTTGTCATCCTCTGTTTC 947
|| || |||||||| ||||| ||||||| ||| || ||||| |||||||| ||||| |||
Sbjct 1154 CGTACACAGAGACAAGGAGGTATGGTGATGTGTGCGTCTGTTCTTGTCATTCTCTGCTTC 1213
Query 948 ATCATGCTGCTACTCTTAATCCTTAAGGAAATAT-TCTTGTGA 989
||||||||| ||||||||||||| ||||| || | | ||||||
Sbjct 1214 ATCATGCTGGTACTCTTAATCCTCAAGGAGAT-TCTGTTGTGA 1255
> AT4G04740.2 | Symbols: CPK23 | calcium-dependent protein kinase
23 | chr4:2403609-2408737 REVERSE LENGTH=2518
Length=2518
Score = 100 bits (54), Expect = 2e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 741 GAATCAGTAAACGATCTTGCTCAAATCATGAAGGATCTTTCTGCACTTGTGATAGATCAG 800
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 2459 GAATCAGTAAACGATCTTGCTCAAGTCATGATGGATCTTTCTGCACTTGTGATAGATCAG 2518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49430400648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5