BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942303
Length=1983
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27870.1 | Symbols: | Plant invertase/pectin methylesterase... 2531 0.0
> AT5G27870.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:9878991-9881806 REVERSE LENGTH=2199
Length=2199
Score = 2531 bits (1370), Expect = 0.0
Identities = 1597/1709 (93%), Gaps = 5/1709 (0%)
Strand=Plus/Plus
Query 26 ATGTCATATGGGTACGACGAT---GATGCAAAGAGGAAAAAGAGATACGTTATTATCTCT 82
||||||||||| ||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 1 ATGTCATATGGATACGACGATGAGGATGCAAAGAGGAAAAAGAGATATGTAATTATCTCT 60
Query 83 ATCTCCTCTGTTCTTTTGATCTCCATGGTTGTTGCAGTTACCATAGGCGTTAGCGTCAAC 142
||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||
Sbjct 61 ATCTCCTCTGTTCTTTTAATCTCCATGGTTGTCGCTGTTACCATAGGTGTTAGCGTCAAC 120
Query 143 AAGTCCGATAACGGAGGTGAAGGAGAAATCACAACTTCTGTTAAAGCCATCAAAGATGTT 202
||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGTCCGATAACGCTGGTGACGAAGAAATCACAACTTCTGTTAAAGCCATCAAAGATGTT 180
Query 203 TGCGCACCGACGGATTACAAGGAGACTTGTGAGGATACTCTAAGGAAAGATGCGAAGAAC 262
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 181 TGTGCACCGACGGATTACAAAGAGACTTGTGAGGATACACTAAGGAAAGATGCGAAGGAC 240
Query 263 ACATCAGACCCGTTGGAGCTAGTGAAGACAGCTTTTAACGCGACGATGAAACAGATAAGT 322
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 ACATCAGACCCGTTGGAGCTGGTGAAGACAGCTTTTAACGCAACGATGAAACAAATAAGT 300
Query 323 GACGTGGCAAAGAAGTCACAGACTATGATTGAGCTACAAAAGGATCCGAGGACGAAGATG 382
|||||||||||||||||||| |||||||||||||||||||||||||| ||| | ||||||
Sbjct 301 GACGTGGCAAAGAAGTCACAAACTATGATTGAGCTACAAAAGGATCCAAGGGCAAAGATG 360
Query 383 GCTTTGGATCAATGCAAGGAGCTAATGGATTACGCAATCGGTGAGCTTAGTAAGTCGTTT 442
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCGTTGGATCAATGCAAGGAGCTAATGGATTACGCAATCGGTGAGCTTAGTAAGTCGTTT 420
Query 443 GAGGAGTTAGGGAGGTTCGAATTTCATAAGGTTGATGAAGCGTTGATTAAGCTGAGGATT 502
|| ||||| |||| |||||| |||||||| |||||||| || ||| ||||| ||||||||
Sbjct 421 GAAGAGTTGGGGAAGTTCGAGTTTCATAAAGTTGATGAGGCCTTGGTTAAGTTGAGGATT 480
Query 503 TGGCTTAGTGCGACGATTAGCCATGAGCAAACTTGTCTTGATGGGTTTCAAGGGACACAA 562
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGGCTTAGTGCGACGATAAGCCATGAGCAAACTTGTCTTGATGGGTTTCAAGGGACACAA 540
Query 563 GGGAATGCAGGTGAGACGATTAAGAAGGCATTGAAAACTGCGGTGCAGTTAACGCATAAC 622
|| ||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 541 GGTAATGCTGGTGAGACGATAAAGAAGGCGTTGAAAACCGCGGTGCAGTTAACGCATAAC 600
Query 623 GGGCTTGCAATGGTCAGCGAGATGTCGAATTACTTGGGACAAATGCAGATTCCGGAGATG 682
|||||||||||||| | ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 601 GGGCTTGCAATGGTTACCGAAATGTCGAATTACTTAGGACAAATGCAGATTCCGGAGATG 660
Query 683 AATAGTCGACGGTTGTTGTCCCAAGAGTTTCCTTCGTGGATGGATGGC-CGAGCGCGTAG 741
|||||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 661 AATAGTAGACGGTTGTTGTCCCAAGAGTTTCCTTCGTGGATGGAT-GCGCGAGCACGTAG 719
Query 742 GCTTTTGAATGCTCCTATGTCCGAGGTCAAACTGGATATCGTGGTGGCGCAAGACGGAAG 801
||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 720 GCTATTGAACGCTCCTATGTCCGAGGTAAAACCCGATATCGTGGTGGCGCAAGACGGAAG 779
Query 802 TGGTCAGTACAAGACGATCAATGAAGCATTGAATTATGTCCCGAAGAAGAAGAACACGAC 861
|||||||||||||||||| || || |||||||||| ||||||||||||||||||||||||
Sbjct 780 TGGTCAGTACAAGACGATTAACGAGGCATTGAATTTTGTCCCGAAGAAGAAGAACACGAC 839
Query 862 TTTCGTGGTTCACATTAAGGCCGGAATCTATAAAGAGTACGTTCAGGTGAATAGGAGCAT 921
|||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 840 TTTCGTGGTTCATATTAAGGAAGGAATCTATAAAGAGTATGTTCAGGTGAATAGGAGCAT 899
Query 922 GACACATCTGGTTTTTATCGGCGATGGCCCTGAGAAAACTGTCATTTCCGGCAGCAAAAG 981
||||||||| ||||| || || |||||||| || |||||||||||||| |||||||||||
Sbjct 900 GACACATCTAGTTTTCATAGGTGATGGCCCCGACAAAACTGTCATTTCTGGCAGCAAAAG 959
Query 982 TTACAAGGATGGTATTACCACCTACAAAACCGCCACTGTTGCAATCGTTGGAGATCATTT 1041
||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 960 TTACAAGGACGGTATTACTACCTACAAAACAGCCACCGTTGCAATCGTTGGAGATCATTT 1019
Query 1042 CATTGCCAAGAACATTGGGTTCGAGAACACAGCCGGGGCAATAAAGCATCAAGCAGTTGC 1101
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 CATTGCCAAGAACATTGCCTTCGAGAACACAGCCGGGGCAATAAAGCATCAAGCGGTTGC 1079
Query 1102 GATTAGGGTTCTATCAGATGAGTCAATATTCTACAATTGTAAATTCGATGGTTACCAAGA 1161
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TATTAGGGTTCTAGCAGATGAGTCAATATTCTACAATTGTAAATTCGATGGTTACCAAGA 1139
Query 1162 TACTCTATATGCACATTCCCACCGTCAGTTTTACCGCGACTGTACTATCTCGGGCACCAT 1221
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1140 CACTCTATATGCACATTCCCACCGTCAGTTTTACCGTGACTGTACTATCTCGGGCACAAT 1199
Query 1222 CGATTTTCTCTTTGGAGATGCAGCTGCGGTATTCCAGAATTGTACTTTATTGGTGAGAAA 1281
|||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||
Sbjct 1200 CGATTTTCTCTTTGGAGACGCAGCTGCGGTATTCCAAAACTGTACTTTACTGGTGAGAAA 1259
Query 1282 GCCACTTCTAAATCAAGCATGCCCCATTACAGCCCATGGACGTAAAGATCCGCGAGAATC 1341
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GCCACTTCTAAACCAAGCATGCCCCATTACAGCCCATGGACGTAAAGATCCGCGAGAATC 1319
Query 1342 CACGGGATTTGTTCTCCAAGGATGTACGATTGTTGGTGAACCGGATTACTTGGCAGTCAA 1401
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 CACGGGATTTGTTCTCCAAGGATGTACGATTGTTGGCGAACCGGATTACTTGGCAGTCAA 1379
Query 1402 GGAAAATAGCAAAGCTTACCTTGGAAGGCCATGGAAAGAGTATTCAAGAACTATCATCAT 1461
|||| | |||||| |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1380 GGAACAGAGCAAAACTTATCTTGGAAGACCATGGAAAGAGTATTCAAGAACTATCATCAT 1439
Query 1462 GAACACGTTCATCCCAGATTTTATTCCGCCGGAAGGATGGCAACCGTGGCTTGGCGATTT 1521
|||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 1440 GAACACGTTCATACCAGATTTTGTTCCGCCGGAAGGATGGCAACCGTGGCTCGGCGAATT 1499
Query 1522 CGGTCTTAACACACTTTTCTACTCGGAGGTACAGAACACTGGGCCAGGTGCACCTATCAC 1581
|||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 1500 CGGTCTTAACACACTTTTCTACTCGGAGGTGCAGAACACTGGGCCGGGTGCAGCTATCAC 1559
Query 1582 AAAACGGGTTACTTGGCCTGGAATCAAGAAGTTGAGTGAAGAAGAAATACTTACATTCAC 1641
|||||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||||
Sbjct 1560 AAAACGGGTTACTTGGCCAGGAATCAAGAAGTTGAGTGATGAAGAAATCCTTAAATTCAC 1619
Query 1642 TCCAGCTCAATACATCCAAGGTGATGCTTGGATTCCGGGTAAAGGTGTTCCGTATATCCC 1701
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1620 TCCAGCTCAATACATCCAAGGTGACGCTTGGATTCCTGGTAAAGGTGTTCCGTACATCCT 1679
Query 1702 AGGTCTTTTCACTGGAAATGGCTCAACAA 1730
||||||||| | |||||| || || ||||
Sbjct 1680 AGGTCTTTTTAGTGGAAACGGTTCCACAA 1708
Score = 178 bits (96), Expect = 2e-43
Identities = 129/145 (89%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 1812 CACCTTCGACGGTAGTGTCTCCTTCAACTTCTCCACCAGCTGGCCATCTTGGTTCCCCAC 1871
|||| || | ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1895 CACCATCAATGGTAGTGTCTCCTTCAACTTCTCCACCAGCTGGTCATCTTGGTTCCCCAT 1954
Query 1872 CAGCTACACCTTCAACGATAGTGTCTCCTTCAACATCTCCACCAGCTGACCATCTTGGTT 1931
||| |||||||||| || |||| ||||||||||| ||||||||||||| ||||||||||
Sbjct 1955 CAGATACACCTTCATCGTTAGTTTCTCCTTCAACTTCTCCACCAGCTGGTCATCTTGGTT 2014
Query 1932 CCCCACCA-ACTACACCTTCATCGG 1955
| ||| || | ||||||||||||||
Sbjct 2015 CTCCATCAGA-TACACCTTCATCGG 2038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98242466565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5