BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942310

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27760.1 | Symbols:  | Hypoxia-responsive family protein | c...   508    1e-143


> AT5G27760.1 | Symbols:  | Hypoxia-responsive family protein | 
chr5:9830343-9831790 FORWARD LENGTH=575
Length=575

 Score =  508 bits (275),  Expect = 1e-143
 Identities = 310/327 (95%), Gaps = 2/327 (1%)
 Strand=Plus/Plus

Query  5    CTCATCTTCTTCAACAATGGCAGAATCAAAGACAAAATTTGCAGAAGTCAGGGAATGGAT  64
            ||||||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||
Sbjct  38   CTCATCTTCTTCAACAATGGCGGAACCAAAGACAAAAGTTGCAGAAATCAGGGAATGGAT  97

Query  65   CGTCGAACACAAGCTTCGTACCGTTGGTTGTTTATGGCTTAGTGGTATCTCTGGTTCAAT  124
            | ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  98   CATCGAACATAAGCTTCGTACCGTTGGTTGCTTATGGCTAAGTGGTATCTCTGGTTCAAT  157

Query  125  CGCCTATAACTGGTCAAAACCTGCCATGAAAACCAGTGTCAGAATCATCCACGCTAGGTT  184
             || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  158  TGCTTATAATTGGTCTAAACCTGCCATGAAAACCAGTGTCAGAATCATCCACGCTAGGTT  217

Query  185  GCATGCTCAGGCGCTGACATTAGCCGCTCTGGCTGGAGCAGCTGCAGTGGAGTACTATGA  244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  218  GCATGCTCAGGCGCTGACATTAGCCGCTCTGGCTGGAGCAGCTGCAGTGGAGTACTATGA  277

Query  245  TCACAAATCTGGAGCCACTGATAGAATCCCAAAATTTCTGAAGCCTGATAACTTAAATAA  304
            |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct  278  TCACAAATCTGGAGCCACTGATCGAATCCCGAAATTTCTGAAGCCTGATAACTTAAATAA  337

Query  305  GGACTAGAAA-C-CCTTACCATGGCTC  329
            |||||||||| | || |||||||||||
Sbjct  338  GGACTAGAAATCTCCGTACCATGGCTC  364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5