BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942315

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) s...   309    2e-83


> AT3G16010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) 
superfamily protein | chr3:5434014-5436264 FORWARD LENGTH=2077
Length=2077

 Score =  309 bits (167),  Expect = 2e-83
 Identities = 224/251 (89%), Gaps = 6/251 (2%)
 Strand=Plus/Plus

Query  276   TTGTTTGGAATATACTTTAAGGAGGGTAAAGTTGAGAAGGCTTTACATCTTTTCCAGGAG  335
             ||||| ||||| |||||||||| ||||||||||||||| |||||| |||||||| |||||
Sbjct  948   TTGTTGGGAATTTACTTTAAGGTGGGTAAAGTTGAGAAAGCTTTAGATCTTTTCGAGGAG  1007

Query  336   ATGAAACGAGCAGGTTGCTTTCA--AACGGTTTATACGTACACGGAACTGATAAAGGGAC  393
             |||||||||||||||||  ||||  ||| |||||||||||||||||||||||||||||||
Sbjct  1008  ATGAAACGAGCAGGTTG--TTCACCAACAGTTTATACGTACACGGAACTGATAAAGGGAC  1065

Query  394   TTGGTAATGCTGGGTGGGTAGAAGAAGCATATGGTTTATATAAGGACATGCTTAGAGATG  453
             |||| || |||||| ||||||| ||||||||||| || ||||| ||||||||||||||||
Sbjct  1066  TTGGCAAAGCTGGGAGGGTAGATGAAGCATATGGCTTCTATAAAGACATGCTTAGAGATG  1125

Query  454   GATTGACTCCTGATGTTGTCTTCTTAATCTATCTCATGAGAACATGTTAGGCAAAGCGGG  513
             ||||||||||||||||||| ||||||| | |||| |||| | ||| |||||||||| |||
Sbjct  1126  GATTGACTCCTGATGTTGTGTTCTTAAACAATCTGATGA-A-CATTTTAGGCAAAGTGGG  1183

Query  514   TCGAGTGAAGG  524
             ||||||| |||
Sbjct  1184  TCGAGTGGAGG  1194



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25066839353


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5