BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942326

Length=290
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27700.1 | Symbols:  | Ribosomal protein S21e  | chr5:980730...   425    9e-119


> AT5G27700.1 | Symbols:  | Ribosomal protein S21e  | chr5:9807302-9808506 
REVERSE LENGTH=600
Length=600

 Score =  425 bits (230),  Expect = 9e-119
 Identities = 272/292 (93%), Gaps = 3/292 (1%)
 Strand=Plus/Plus

Query  2    TTCAAAGCTAATC-TTCAAGATGCAAAACGAAGAGGGTCAGACCACTGAGCTTTACATTC  60
            ||||||||||| | |||||||||||||||||||||||||||  |||||||||||||||||
Sbjct  93   TTCAAAGCTAAGCTTTCAAGATGCAAAACGAAGAGGGTCAGGTCACTGAGCTTTACATTC  152

Query  61   CTAGGAAATGCTCTGCTACTAACCGGTTGATCACTTCCAAGGATCATGCCTCTGTTCAGC  120
            |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  153  CTAGGAAATGTTCTGCTACTAACCGGTTGATCACATCCAAGGATCATGCCTCTGTTCAGC  212

Query  121  TCAACATTGGTCATTTAGATGCTAATGGCGTGTACACCGGACAATTCACCACCTTTGCTC  180
            ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct  213  TCAACATTGGTCATTTAGATGCTAATGGCTTGTACACCGGACAGTTCACAACCTTTGCTC  272

Query  181  TCTGTGGTTTCGTCCGTGCCCAGGGAGACGCAGACAGTGGTGTCGACAGGCTGTGGCAGA  240
            |||| ||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||
Sbjct  273  TCTGCGGTTTTGTCCGTGCTCAGGGAGACGCTGACAGTGGTGTCGACAGGTTGTGGCAGA  332

Query  241  AGAAGAAGGTCGAAGCCAAGCAAAACTAAGAGTTTAAGCTGTC--GTTTTTT  290
            |||||||||| |||||||| |||||||||||| |||| |||||  |||||||
Sbjct  333  AGAAGAAGGTTGAAGCCAAACAAAACTAAGAGCTTAATCTGTCTTGTTTTTT  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13371221234


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5