BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942336
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27620.1 | Symbols: CYCH;1 | cyclin H;1 | chr5:9771324-97748... 1683 0.0
> AT5G27620.1 | Symbols: CYCH;1 | cyclin H;1 | chr5:9771324-9774875
FORWARD LENGTH=1640
Length=1640
Score = 1683 bits (911), Expect = 0.0
Identities = 998/1040 (96%), Gaps = 6/1040 (1%)
Strand=Plus/Plus
Query 12 ACTGAGTAAATGGCGGATTTTCAGACATCAACACAACGGGCCAAGTGGATTTTCACTCCC 71
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 ACTCAGTTAATGGCGGATTTTCAGACATCAACACAACGGGCCAAGTGGATTTTCACTCCC 489
Query 72 CAGAAACTGGCAGACAAATATAAAGCTGCTAACAAGAGGGCAGTGCAAATGCTGGAGAAG 131
|||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 490 CAGAAACTGGCAGAGAGATATAAAGCTGCTAACCAGAGGGCAGTGCAAATGCTGGAGAAG 549
Query 132 TGTGGAACAACCCAAGTTGAAGTAGATGCCAGTGGATCACTAACATATCCTAAAGATAAA 191
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 550 TGTGGAACAACTCAAGTTGAAGTAGATGCTAGTGGATCACTAACATATCCTAAAGATAAA 609
Query 192 GTTGATGCAGCAGATCCAGCTGATAAGAAGCTTAAGCCTTTGAGTGTTGATGAAGAACGG 251
|||| | ||| ||||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 610 GTTGGTTCAGGAGATCAAGCTGATAAGAAGCTTAAGCCTTTGAGTGCTGATGAAGAAAGG 669
Query 252 TTCATGAGAGCATTTTATGAGGCTAAGGTCCAAGAAGTGTGTAGTGCCTTTGCATTTCCT 311
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 670 TTCATGAGAGCATTTTATGAGGCAAAGGTCCAAGAAGTGTGCAGTGCCTTTGCATTTCCT 729
Query 312 CACAAGATTCAGGCAACAGCCCTCCAATACTTTAAGAGATTTTATCTGCAATGGTCTGTT 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CACAAGATTCAGGCAACAGCCCTCCAATACTTTAAGAGATTTTATCTGCAATGGTCTGTT 789
Query 372 ATGCAACATCATCCAAAAGAGATAATGTTAACCTGTGTGTATGCAGCTTGTAAAATAGAG 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 ATGCAACATCATCCAAAAGAGATAATGTTAACCTGTGTGTATGCAGCTTGTAAAATAGAG 849
Query 432 GAGAATCATGTATCTGCTGAGGAAATTGGGAAAGGGATTAACCAAGATCACCAAATAATT 491
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 850 GAGAATCATGTATCTGCTGAGGAAATTGGGAAAGGGATTAACCAAGATCACCGAATAATT 909
Query 492 CTCAAGTACGAGATGGCTGTTCTTCAGAGTTTGGAATTTGATCTGATTGTTTATGCACCG 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 CTCAAGTACGAGATGGCTGTTCTTCAGAGTTTGGAATTTGATCTGATTGTTTATGCACCG 969
Query 552 TATCGTGCAATCGAAGGTTTTGTCAACAATATGGAGGAATTTCTTCAAGCTAGAGATGAT 611
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 970 TATCGTGCAATCGAAGGTTTTGTCAACAACATGGAGGAATTTCTTCAAGCTAGAGATGAT 1029
Query 612 CAAATCCAGAAACTGGAGAGTTTACTCAAAGCGGCGACAGCAGAAGCCGATAAAGTTATG 671
||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1030 GAAATCCAAAAACTAGAGAGTTTGCTCAAAGGGGCGACAGCAGAAGCCGATAAAGTTATG 1089
Query 672 CTCACAGATGCTCCACTCCTCTTTCCTCCTGGCCAGTTGGCATTGGCGTCTTTACGTATT 731
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1090 CTCACAGATGCTCCACTCCTCTTTCCTCCTGGCCAGTTGGCATTGGCGTCGTTACGTATT 1149
Query 732 GCAAATGGGGTTCTTGGAGTGATTGACTTTGATAGGTACCTAGAGAACATTGTTTCTCAA 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 GCAAATGGGGTTCTTGGAGTGATTGACTTTGATAGGTACCTAGAGAACATTGTTTCTCAA 1209
Query 792 CCAAACTCTGAGCACACAACTTCAGAGCTCACAAAGTTCCTTGATGACATCGAATTTTTG 851
|| |||||||||||||| ||||||||||| |||||||| |||||| ||||||||| ||||
Sbjct 1210 CCGAACTCTGAGCACACGACTTCAGAGCTTACAAAGTTACTTGATAACATCGAATATTTG 1269
Query 852 GTAAAGAACTACAAGAAACCAAGTGAAAAGGACATGAAGCATATCAACCGGAAGCTAAAA 911
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 GTAAAGAACTACAAGTGCCCAAGTGAAAAGGACATGAAGCATATCAACCGGAAGCTAAAA 1329
Query 912 TCTTGTCTAGGACATAGTTCTTCACATGACGAGAGTAAGAAACGGGAGAAGAGATCGAAG 971
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1330 TCTTGTCTAGGACATAGTTCTTCACATGACGAGAGTAAGAAACGGGAGAAGAGATCAAAA 1389
Query 972 CACAAGTCCCATAGGAGCTCCAATGATACACCAAACGGGGCACCG--A----TAGGTTGA 1025
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1390 CACAAGTCCCATAGGAGCTCCAATGATACACCAAACGGGGCACCGCCACCCATAGGTTGA 1449
Query 1026 GTTTCTTGTTCTGCCATTAG 1045
|||||| || ||||||||||
Sbjct 1450 GTTTCTCGTACTGCCATTAG 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51238829940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5