BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942337
Length=2746
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27610.1 | Symbols: ATALY1, ALY1 | DIRP ;Myb-like DNA-bindin... 3290 0.0
> AT5G27610.1 | Symbols: ATALY1, ALY1 | DIRP ;Myb-like DNA-binding
domain | chr5:9764135-9769903 FORWARD LENGTH=3344
Length=3344
Score = 3290 bits (1781), Expect = 0.0
Identities = 2131/2299 (93%), Gaps = 28/2299 (1%)
Strand=Plus/Plus
Query 7 GGCAGAGAAATCAGTT-TATGGCGCCTAGTAGGAAGTCGAAGAGTGTAAACAAGCGCTTC 65
|||||||||| ||||| ||||||||||| |||||||||||||||||| |||||||| |||
Sbjct 214 GGCAGAGAAAACAGTTATATGGCGCCTACTAGGAAGTCGAAGAGTGTGAACAAGCGTTTC 273
Query 66 ACTAATGAAGCTTCTCCAGATATCAATGGTGGGAGCGCAAGCAAAACCAAGCAAAGAAAG 125
|| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 274 ACCAATGAAGCGTCTCCAGATATCAATTTTGGGAGCGCAAGCAAAACCAAGCAAAGAAAG 333
Query 126 AAGAAATTGGCTGACAAGCTAGGACCTCAGTGGACC-AAAGGAGAGCTTGCACGTTTCTA 184
|||||||||||||| ||||| ||||||||||||||| ||||| ||||||| ||||||||
Sbjct 334 AAGAAATTGGCTGATAAGCTGGGACCTCAGTGGACCAAAAGG-GAGCTTGTGCGTTTCTA 392
Query 185 TGACGCTTATCGGAAGCATGTGGGAGACTGGAAAAAGGTAGCTGCTGCAGTGCGGAATAA 244
||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 393 TGATGCTTATAGGAAGTATGTGGGAGACTGGAAAAAGGTAGCTGCTGCAGTACGGAATAA 452
Query 245 CCGGTCTGTTGAGATGGTGGAAGCTCTTTTTTCTATGAATCGGGCATACTTATCCCTGCC 304
|||||||||||||||||| ||| | || |||| |||||||||||||||||||||| ||||
Sbjct 453 CCGGTCTGTTGAGATGGTCGAAACACTCTTTTGTATGAATCGGGCATACTTATCCTTGCC 512
Query 305 TGAGGGAACTGCGTCTGTAGCTGGCCTCATTGCGATGATGACTGATCATTACAGCGTCAT 364
||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 513 CGAGGGAACTGCTTCTGTAGCTGGCCTTATTGCAATGATGACTGATCACTACAGCGTCAT 572
Query 365 GGAGGGGAGCGAAAGCGAAGTAGAAGACCATGATGCTTCTGAAGTACCGAGGAAACATCT 424
||||||||||||||| |||| ||||||||||||||||||||| ||| |||||||||||||
Sbjct 573 GGAGGGGAGCGAAAGTGAAGGAGAAGACCATGATGCTTCTGAGGTAACGAGGAAACATCT 632
Query 425 CAAGCGCAAACGTCCTCAAGTTCGGCCTATTGATTTTCGAGAAGAAGTTATTCCACCACA 484
|||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 633 GAAGCGCAAACGTCCTCAAGTTCTGCCTAGTGATTTTCGAGAAGAAGTTGTTCCACCACA 692
Query 485 TTCAGTTGCATCAGTAGAAGGATGCCTCTCATTATTGAAGCAGACACAAGCTTATGAAAA 544
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 693 TTCAGTTGCATCAGTAGAAGGATGTCTCTCATTCTTGAAGCAGACACAAGCTTATGAAAA 752
Query 545 AAGGCGACGTGCCACTGGGAAACGTACACCTCGGTTTCTTGTAGCAATTACACACGAGAG 604
||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 753 AAGGCAACGGGCCACTGGAAAACGTACACCTCGGTTTCTTGTCGCAATTACACATGAGAG 812
Query 605 GGATGATAGAGCAGATTCTAGTCCACCAAATAAAAGAGCCAAGAAGCAACTTGATGCCGA 664
|||||||| || ||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 813 GGATGATATAGAAGATTTTAGTCCACCAAATAAAAGAGCCAAGAAACAACTTGATGCCGA 872
Query 665 TGATGATGCATCAAGAAGGGGAGGAGGGTCTCCCTATAGAAGAACAGAACTCAGTGACAG 724
||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |
Sbjct 873 TGATGATGCATCAAGAAGGGGAGGAGGGTCTCCATACAGAAGAAAAGAACTCAGTGAAAT 932
Query 725 CACACAAACTAGGCTTCGAAAAATGTTACAAGCACAGGAAGCTCAATTCAAGCACCCTGA 784
||||| |||||||||| | |||| || ||||||||||||||| |||||||||||||||||
Sbjct 933 CACACCAACTAGGCTTAGGAAAACGTCACAAGCACAGGAAGCACAATTCAAGCACCCTGA 992
Query 785 TAGTTCCATGTTTGAGAATGGGGTGAGAACAAGCCGAGATAGGA-GGCATAAAAAGGGAG 843
|||||||||||||||||||||||| | | |||||| || |||||||||||||||
Sbjct 993 TAGTTCCATGTTTGAGAATGGGGT--G----A---GAGATA-GATGGCATAAAAAGGGAG 1042
Query 844 CTGCTGATAGAGATGGTGCCTTGTTGAGGGATATGGAAGGACTTGTTA-CCAAGAAGGGA 902
||||||||||||||||||||||||||| |||||||||||||||||||| |||| || |||
Sbjct 1043 CTGCTGATAGAGATGGTGCCTTGTTGATGGATATGGAAGGACTTGTTACCCAA-AA-GGA 1100
Query 903 AAAAA-TGTGAGAATTGAAGAAGCAGAAGGAAatgattctgatgatgatgatgatgGATT 961
||||| ||||||| |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1101 AAAAATTGTGAGAGTTGAAGAAGCAGAAGGAAATTATTC---TGATGATGATGATGGATT 1157
Query 962 AGGAGCTCTGAAGGCATTGGCTGAAATGTCAGCTTCACTGGCTCCGGCTGCTTTGATGGA 1021
||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1158 AGGAGCTCTGAAGACATTGGCTGAAATGTCAGCTTCACTGGCTCCGGCTGGTTTGTTGGA 1217
Query 1022 ATCAGAATTATCTCCACTGTGGGAAGAAGAAAGAATAGCTAACAACGTGGATGAGAAATC 1081
|||||||| |||||||| |||||||||||||||| | |||||||||||||| |||||||
Sbjct 1218 ATCAGAATCATCTCCACACTGGGAAGAAGAAAGAAAAACTAACAACGTGGATAAGAAATC 1277
Query 1082 TAAGACTCTGGAAACCGTGTCCACAAGCCATCACAGAGAAAAAGCAAAAGAAGCAGGACC 1141
||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1278 TAACACTCTGGAAACCGTGTCAACAAGCCATCACAGAGAAAAAGCAAAACAAGCAGGACT 1337
Query 1142 AGAAGCTAGTCTCCTACTTGCAATTTCAGCCCCCGATAAAAGAAAACCGAAGTCTGTGCC 1201
||||| || |||||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1338 AGAAGATAATCTCCTGCATGCAATTTCAGCCCCTGATAAAAGAAAACCGAAGTCTGTGCC 1397
Query 1202 GGAATCCGTTGATGGTAATGTTGTTTCTGTCGAAGAGCTTGGCAGTTTAAGAAGAAAACG 1261
||||||||||||||||||||||||||| |||| |||||| ||| || ||| ||||||||
Sbjct 1398 GGAATCCGTTGATGGTAATGTTGTTTCCATCGAGGAGCTTCGCACTTCAAGCAGAAAACG 1457
Query 1262 TAAACCAAAGTTTCAGGTGTTAGATGTTGAAGCTCCAAAAGAGTCTATTCAGGAAAAATT 1321
||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1458 TAAACCAAAGTTTCAGGTGCTAGATGTTGTAGCTCCAAAAGAGTCTACACAGGACAAATC 1517
Query 1322 TCTATATACTAAGGAATCGGCTGAAGATGATAATTTGAAGACTCTAGTCAAAGCAAGACG 1381
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1518 TCTATATACTAAGGAATCGGCTGAAGTTGATAGTTTGAAGACTCCCGTCAAAGCAAGACG 1577
Query 1382 TTCTGGTCAAGGTCCCGCAAAACAGCTGAAAACTGCAAAGACCTCGGAAGAATCTTCTTT 1441
|||| |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1578 TTCTAGTCAAGGTCCAGCAAAACAGCTGAAAACTGCAAAGACCACGGTAGAATCTTCTTC 1637
Query 1442 AGCTAGTGATAAGAAATTAACTATACCGGATGCAATAGTGCCAGCTACACAAGTTTCAGC 1501
|||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1638 AGCTAGTGATAAGAAAATAACTGGACCGGATGCAGTAGTGCCAGCTACACAAGTTTCAGC 1697
Query 1502 TTTGGGTCCAGCGACTTTGCCACAGAAACCTCCAAACAGGCGTAAGATGAGTTTGAAGAA 1561
|| |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1698 TTCGGGTCCAGAGACTTTGCCACAGAAACCACCAAACAGGCGTAAGATAAGTTTGAAGAA 1757
Query 1562 AAGTTTACAGGAAAGAGCTAAATCTTTAGAAACCACTCATGACAAGCTACGTAGTCGCAA 1621
||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 1758 AAGTTTACAAGAAAGAGCTAAATCTTTAGAAACCACTCATGACAAACCACGTAGTTTCAA 1817
Query 1622 AAGTCTTTCAGAACATGAATTACTAAAGGAGAAGTTTTCAAATTGTCTGTCATATCCATT 1681
|| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1818 AAAACTTTCAGAACATGAATTACTACAGGAGAAGTTGTCAAATTGTCTGTCATATCCATT 1877
Query 1682 GGTACGTCGATGGTGCATATATGAATGGTTCTACAGTGCTATTGACTATCCCTGGTTTGC 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1878 GGTACGTCGATGGTGCATATATGAATGGTTCTACAGTGCTATTGACTATCCCTGGTTTGC 1937
Query 1742 AAAGATGGAGTTCACTGATTATCTAAATCATGTGGGGCTTGGTCACGCTCCAAGACTTAC 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1938 AAAGATGGAGTTCACTGATTATCTAAATCATGTGGGGCTTGGTCACGCTCCAAGACTTAC 1997
Query 1802 TCGTGTTGAATGGAGTGTCATTAAAAGTTCTCTCGGTAGACCTCGGAGGTTGTCTGAGAG 1861
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1998 TCGTGTTGAATGGAGTGTCATTAAAAGTTCTCTCGGTAGACCTCGGAGATTGTCTCAGAG 2057
Query 1862 GTTCCTACATGATGAGCGGGATAAACTCCAACAATATCGTGAATCTGTGAGAAAGCATTA 1921
|||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 2058 ATTCCTACAGGATGAGCGGGATAAACTCCAAGAATATCGTGAGTCTGTGAGAAAGCATTA 2117
Query 1922 TACAGAGCTCCGTGGATGTGCTACGGGAGTGCTTCATACAGATTTGGCCCGTCCTTTATC 1981
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2118 TACAGAGCTGCGTGGATGTGCTACGGGAGTGCTTCATACAGATTTGGCCCGTCCTTTATC 2177
Query 1982 AGTCGGGAATAGAGTCATTGCCATCTATCCTAAAACACGGGAAATTCGTGATGGCAAGAT 2041
||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 2178 AGTCGGGAATAGAGTGATTGCCATCCATCCTAAAACACGGGAGATTCGTGATGGCAAGAT 2237
Query 2042 TCTTACTGTGGATCATAACAAGTGCAACGTTTTGTTTGATGAATTGGGTGTTGAGTTAGT 2101
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 2238 TCTTACTGTGGATCATAACAAGTGCAACGTTCTCTTTGATGAATTGGGTGTCGAGTTAGT 2297
Query 2102 TATGGATATTGACTGCATGCCTTTAAATCCATTGGAATACATGCCAGAGGGGCTAAGGAG 2161
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2298 TATGGACATTGACTGCATGCCTTTAAATCCATTGGAATACATGCCAGAGGGTCTAAGGAG 2357
Query 2162 GAAAACTGATAAGTG-TGTAGCTATAGGCAAAGAAGCACAG-CTTAACAGACACCCAAGC 2219
| ||| ||||||||| | | |||||| ||||||||||| || ||||||||||||||||||
Sbjct 2358 GCAAATTGATAAGTGCT-TGGCTATATGCAAAGAAGCA-AGGCTTAACAGACACCCAAGC 2415
Query 2220 TCTGATGCATCTCTTCTGTTCTCTCCTTCTGTGCTCGAAAATGTCAAATTTTCCATGAAT 2279
|||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2416 TCTGATGCATCTGTTCTGTTCTCTCCTTCTGTGCTTGAAAATGTCAACTTTTCCATGAAT 2475
Query 2280 CATCCT---GCGAAACAGG 2295
| |||| ||||||||||
Sbjct 2476 CCTCCTCCTGCGAAACAGG 2494
Score = 649 bits (351), Expect = 0.0
Identities = 424/458 (93%), Gaps = 9/458 (2%)
Strand=Plus/Plus
Query 2293 AGGCTGCATCGTCGGGGAAGAACAATGAAGACTCAGGGAATATGGTCCACCAAGCT--A- 2349
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
Sbjct 2708 AGGCTGCATCGTCGGGGAAGAACAATGAAGACTCAGAGAATATGGTTCACCAAGCTTTAA 2767
Query 2350 GCTCAATTGGCGAACATCAACCATTATACAGCTCTATAGTGCCTGGTATCAAGCATCAAG 2409
|||| |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||
Sbjct 2768 GCTCCATTGGCGAACATCAGCCATTAGACAACTCTATAGTGCCTGGTATCAAGCATCAAG 2827
Query 2410 AGCATACCAATGGCAGCTTGGATCATTAT-CCTTCAAACACAGCAGAGCCAATGACTAAC 2468
|| ||||||||||||||||||||||| || |||| ||||||||||||||| |||| ||||
Sbjct 2828 AGTATACCAATGGCAGCTTGGATCATCATTCCTT-AAACACAGCAGAGCCGATGAGTAAC 2886
Query 2469 GGTTTCATCTCACAGGACGGATCAGGGAAAAACAAAACGCAAATGCCTTCAGAGCTTATC 2528
||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||
Sbjct 2887 GGTTTCATCTCACAGGAAGGATCAGGAAAAAACAAAACACCAATGCCTTCAGAGCTTATC 2946
Query 2529 ACCTCTTGTGTTGCCTCTTGGCTCATGATGCAGATGATCTCACAGAAGCAGTACCCACCA 2588
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2947 ACCTCTTGTGTTGCATCTTGGCTCATGATGCAGATGATCTCAAAGAAGCAGTACCCACCA 3006
Query 2589 GAAGATGTGGCTCAGCTAATGGATACAGCAGTGAGTGACTTGCAGCCACGGTGTCCACAG 2648
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 3007 GCAGATGTGGCTCAGCTAATGGATACAGTAGTGAATGACTTGCAGCCACGGTGTCCACAG 3066
Query 2649 AACATGCCGATATACAGAGAAATTCAGACTTATATGGGACTGATCAAGACTCAAATCATG 2708
|| ||||||||||||||||||||||| |||| ||||||| |||||||||||||||| |||
Sbjct 3067 AATATGCCGATATACAGAGAAATTCAAACTTGTATGGGATTGATCAAGACTCAAATAATG 3126
Query 2709 GCTCTTGTAAGAACATGAAACATGAAACATTTGTGTCC 2746
|||||||||||||| | ||||||||||||||||||
Sbjct 3127 GCTCTTGTAAGAACGT----CATGAAACATTTGTGTCC 3160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136403918017
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5