BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942350 Length=1346 Score E Sequences producing significant alignments: (Bits) Value AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA ... 1421 0.0 > AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA ligase | chr5:9695008-9697389 FORWARD LENGTH=1670 Length=1670 Score = 1421 bits (769), Expect = 0.0 Identities = 1138/1315 (87%), Gaps = 30/1315 (2%) Strand=Plus/Plus Query 22 TGGATATCAATCTATTTCGTGAAGAAAAAGGTAACAATCCAGAGATCATTAAAGAATCGC 81 ||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||| Sbjct 84 TGGATATCAATCTATTTCGTGAAGAGAAAGGTAACAATCCGGAGATTATCCGAGAATCGC 143 Query 82 AACGCCGGAGATTTTCCAATGTTGATGTTGTTGACGAGATTATTCAAG-TTGACAAAGAA 140 |||||||||||||| ||| ||||| | || || ||||| ||| ||| | ||||| ||| Sbjct 144 AACGCCGGAGATTTGCCAGCGTTGAAATCGTCGATGAGATCATT-AAGCTGGACAAGGAA 202 Query 141 TGGCGTCAGCGTCAATTTGAAGTTGATAGCTTCAGAAACGAGTTCAACAAGCTGAATAAA 200 |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 203 TGGCGTCAGCGTCAATTTGAAGTTGATAGCTTCAGAAAGGAGTTCAACAAGCTCAATAAG 262 Query 201 CACGTGGCTCAGCTAAAAATTGCTAAAGCTGATGCGACTGAGATTATTCAGCAAACAGAG 260 || ||||| ||||| |||||| |||| ||||||| |||||||||||| ||||| ||| Sbjct 263 CAAGTGGCGCAGCTCAAAATTAAAAAAGAAGATGCGAGTGAGATTATTCAACAAACTGAG 322 Query 261 AAAAACAAACAGGACGCTACCGCGAGAG-AGGTTGAAGTTCGTGAAGCTTTTGCTACTTT 319 ||||||||||| || |||| || | || ||| ||||||||||||||||| |||| |||| Sbjct 323 AAAAACAAACAAGATTCTACTGCAA-AGGAGGCTGAAGTTCGTGAAGCTTATGCTGCTTT 381 Query 320 GCAAGCCAAATTGTTGACAT-TTGGAAATCTGGTTCATGACTCGGTTCCATTTGATAAGG 378 | ||||||| ||| | || |||| ||| |||| ||||| || |||||| ||||||||| Sbjct 382 GAAAGCCAAGTTGGAG-CAAGTTGGTAATTTGGTCCATGATTCTGTTCCAGTTGATAAGG 440 Query 379 ACGAGGCAAATAATCTTGTGATTAAACTGTTCGGTGAAAAGCGGTTTTCTACACCTGATC 438 ||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| || Sbjct 441 ACGAGGCTAATAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTGGTC 500 Query 439 TGAAGCTGAAAAACCATGTGGATCTCGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAG 498 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 501 TGAAGCTGAAAAACCATGTGGATCTTGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAG 560 Query 499 GTGCTGATATTGCTGGAGGGAGAGG-TTATTTCTTAAAAGGATTTGGTGTGAGGCTTAAC 557 ||||||| || ||||||| ||||| || |||||| |||||| |||| ||| ||||||| Sbjct 561 GTGCTGAAATCGCTGGAGCAAGAGGCTT-TTTCTTGAAAGGAGATGGTTTGATGCTTAAC 619 Query 558 CAAGCTCTTATCAACTTTGCGCTAGACTCT-TTGGAAGATAGAGGATTTAC-GCCTTTAC 615 ||||||||||||||||||| | || ||| | ||| || | |||||||| || | || | Sbjct 620 CAAGCTCTTATCAACTTTGGGTTA-ACTTTCTTGAAAAAGAGAGGATTCACAGGATTG-C 677 Query 616 AACCTCCGTTTTTCATGAGGAAGGATGTTATGGCCAAATGCGCACAATTGGCTCAGTTTG 675 ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 678 AACCTCCTTTTTTCATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCG 737 Query 676 ATGAAGAGCTTTACAAGGTGACTGGTGAAGGAGATGACAAGTTTCTTATTGCAACTGCTG 735 |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| Sbjct 738 ATGAAGAGCTTTACAAGGTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTG 797 Query 736 AGCAACCTCTTTGTGCATACCATCGTAATCAAACGATCCATCCGTCCGAGCTTCCCAAAA 795 |||| ||||||||||| |||||| | || || ||| |||||| | ||||||||| || Sbjct 798 AGCAGCCTCTTTGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAA 857 Query 796 GATATGCTGGTTACTCGA-CCTGTTTTAGAAAAGAAGCTGGTTCTCATGGAAGAGATACA 854 |||||||||||||||| | |||| |||||||||||||| ||||| ||||||||||| || Sbjct 858 GATATGCTGGTTACTC-ATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGAGACACC 916 Query 855 CTTGGCATTTTCCGTGTTCACCAGTTTGAGAAAGTTGAACAGTTTTGCATCAC-GGCTCC 913 ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| || Sbjct 917 CTTGGTATTTTCCGTGTTCACCAGTTTGAGAAAATTGAACAGTTTTGCATCACCGGC-CC 975 Query 914 TAATGA---T---TCGTGGGCAATGCTCGAAGAGATGTTAAAGAACTCGGAAGAATTTTA 967 ||| || | ||||||| ||||||||| |||||| | |||||||| ||||| ||||| Sbjct 976 TAACGAGAATGCCTCGTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTA 1035 Query 968 CCAAGCGCTTAAAA-TTCCATACCGAGTCGTTTCGGTTGTCTCTGGAGCTTTGAACGATG 1026 ||||||||| |||| ||||||||| | |||| ||| | ||||||||||| ||||| |||| Sbjct 1036 CCAAGCGCT-AAAACTTCCATACCAAATCGTCTCGATCGTCTCTGGAGCATTGAATGATG 1094 Query 1027 CAGCGGCTAAAAAGTATGACCTGGAAGGATGGTTTCCTGCTTCAGAGAC-TTACAGAGAG 1085 |||| || |||||||| || |||||| ||||||||| | || ||||| || ||| ||| Sbjct 1095 CAGCTGCGAAAAAGTACGATTTGGAAGCTTGGTTTCCTTCGTCCGAGACATT-CAGGGAG 1153 Query 1086 CTTGTGTCCTGTTCCAACTGTACAGACTACCAGGCTCGAAGGCTTGAGATTAGATATGGT 1145 |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 1154 CTTGTGTCTTGTTCCAACTGTACAGACTACCAGGCTCGCAGGCTTGAGATCAGATACGGT 1213 Query 1146 CAGAATAAGAGCAAAGATCAGACGAAGCAGTATGTTCATATGTTGAATTCGACTCTTACC 1205 ||||| |||||||| || ||||| ||||||||||| |||||| |||||||||| ||||| Sbjct 1214 CAGAAAAAGAGCAATGAGCAGACAAAGCAGTATGTGCATATGCTGAATTCGACACTTACT 1273 Query 1206 GCAACAGAGAGGACAATTTGCTGCATTCTTGAGAACTACCAGCGAGAGGATGGTGTTGAT 1265 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || Sbjct 1274 GCAACAGAGAGGACCATTTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGAC 1333 Query 1266 ATTCCTGACGTTCTGCAGCC-TTATATGGGCGGCA-AGAAGTTTATGCCTTTCAA 1318 |||||||| ||||||||||| || ||||||||| | ||| |||| |||||||||| Sbjct 1334 ATTCCTGAGGTTCTGCAGCCGTT-TATGGGCGG-AGAGACGTTTTTGCCTTTCAA 1386 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66264719400 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5