BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942350
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA ... 1421 0.0
> AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA
ligase | chr5:9695008-9697389 FORWARD LENGTH=1670
Length=1670
Score = 1421 bits (769), Expect = 0.0
Identities = 1138/1315 (87%), Gaps = 30/1315 (2%)
Strand=Plus/Plus
Query 22 TGGATATCAATCTATTTCGTGAAGAAAAAGGTAACAATCCAGAGATCATTAAAGAATCGC 81
||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct 84 TGGATATCAATCTATTTCGTGAAGAGAAAGGTAACAATCCGGAGATTATCCGAGAATCGC 143
Query 82 AACGCCGGAGATTTTCCAATGTTGATGTTGTTGACGAGATTATTCAAG-TTGACAAAGAA 140
|||||||||||||| ||| ||||| | || || ||||| ||| ||| | ||||| |||
Sbjct 144 AACGCCGGAGATTTGCCAGCGTTGAAATCGTCGATGAGATCATT-AAGCTGGACAAGGAA 202
Query 141 TGGCGTCAGCGTCAATTTGAAGTTGATAGCTTCAGAAACGAGTTCAACAAGCTGAATAAA 200
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 203 TGGCGTCAGCGTCAATTTGAAGTTGATAGCTTCAGAAAGGAGTTCAACAAGCTCAATAAG 262
Query 201 CACGTGGCTCAGCTAAAAATTGCTAAAGCTGATGCGACTGAGATTATTCAGCAAACAGAG 260
|| ||||| ||||| |||||| |||| ||||||| |||||||||||| ||||| |||
Sbjct 263 CAAGTGGCGCAGCTCAAAATTAAAAAAGAAGATGCGAGTGAGATTATTCAACAAACTGAG 322
Query 261 AAAAACAAACAGGACGCTACCGCGAGAG-AGGTTGAAGTTCGTGAAGCTTTTGCTACTTT 319
||||||||||| || |||| || | || ||| ||||||||||||||||| |||| ||||
Sbjct 323 AAAAACAAACAAGATTCTACTGCAA-AGGAGGCTGAAGTTCGTGAAGCTTATGCTGCTTT 381
Query 320 GCAAGCCAAATTGTTGACAT-TTGGAAATCTGGTTCATGACTCGGTTCCATTTGATAAGG 378
| ||||||| ||| | || |||| ||| |||| ||||| || |||||| |||||||||
Sbjct 382 GAAAGCCAAGTTGGAG-CAAGTTGGTAATTTGGTCCATGATTCTGTTCCAGTTGATAAGG 440
Query 379 ACGAGGCAAATAATCTTGTGATTAAACTGTTCGGTGAAAAGCGGTTTTCTACACCTGATC 438
||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| ||
Sbjct 441 ACGAGGCTAATAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTGGTC 500
Query 439 TGAAGCTGAAAAACCATGTGGATCTCGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAG 498
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 501 TGAAGCTGAAAAACCATGTGGATCTTGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAG 560
Query 499 GTGCTGATATTGCTGGAGGGAGAGG-TTATTTCTTAAAAGGATTTGGTGTGAGGCTTAAC 557
||||||| || ||||||| ||||| || |||||| |||||| |||| ||| |||||||
Sbjct 561 GTGCTGAAATCGCTGGAGCAAGAGGCTT-TTTCTTGAAAGGAGATGGTTTGATGCTTAAC 619
Query 558 CAAGCTCTTATCAACTTTGCGCTAGACTCT-TTGGAAGATAGAGGATTTAC-GCCTTTAC 615
||||||||||||||||||| | || ||| | ||| || | |||||||| || | || |
Sbjct 620 CAAGCTCTTATCAACTTTGGGTTA-ACTTTCTTGAAAAAGAGAGGATTCACAGGATTG-C 677
Query 616 AACCTCCGTTTTTCATGAGGAAGGATGTTATGGCCAAATGCGCACAATTGGCTCAGTTTG 675
||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 678 AACCTCCTTTTTTCATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCG 737
Query 676 ATGAAGAGCTTTACAAGGTGACTGGTGAAGGAGATGACAAGTTTCTTATTGCAACTGCTG 735
|||||||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 738 ATGAAGAGCTTTACAAGGTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTG 797
Query 736 AGCAACCTCTTTGTGCATACCATCGTAATCAAACGATCCATCCGTCCGAGCTTCCCAAAA 795
|||| ||||||||||| |||||| | || || ||| |||||| | ||||||||| ||
Sbjct 798 AGCAGCCTCTTTGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAA 857
Query 796 GATATGCTGGTTACTCGA-CCTGTTTTAGAAAAGAAGCTGGTTCTCATGGAAGAGATACA 854
|||||||||||||||| | |||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 858 GATATGCTGGTTACTC-ATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGAGACACC 916
Query 855 CTTGGCATTTTCCGTGTTCACCAGTTTGAGAAAGTTGAACAGTTTTGCATCAC-GGCTCC 913
||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 917 CTTGGTATTTTCCGTGTTCACCAGTTTGAGAAAATTGAACAGTTTTGCATCACCGGC-CC 975
Query 914 TAATGA---T---TCGTGGGCAATGCTCGAAGAGATGTTAAAGAACTCGGAAGAATTTTA 967
||| || | ||||||| ||||||||| |||||| | |||||||| ||||| |||||
Sbjct 976 TAACGAGAATGCCTCGTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTA 1035
Query 968 CCAAGCGCTTAAAA-TTCCATACCGAGTCGTTTCGGTTGTCTCTGGAGCTTTGAACGATG 1026
||||||||| |||| ||||||||| | |||| ||| | ||||||||||| ||||| ||||
Sbjct 1036 CCAAGCGCT-AAAACTTCCATACCAAATCGTCTCGATCGTCTCTGGAGCATTGAATGATG 1094
Query 1027 CAGCGGCTAAAAAGTATGACCTGGAAGGATGGTTTCCTGCTTCAGAGAC-TTACAGAGAG 1085
|||| || |||||||| || |||||| ||||||||| | || ||||| || ||| |||
Sbjct 1095 CAGCTGCGAAAAAGTACGATTTGGAAGCTTGGTTTCCTTCGTCCGAGACATT-CAGGGAG 1153
Query 1086 CTTGTGTCCTGTTCCAACTGTACAGACTACCAGGCTCGAAGGCTTGAGATTAGATATGGT 1145
|||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1154 CTTGTGTCTTGTTCCAACTGTACAGACTACCAGGCTCGCAGGCTTGAGATCAGATACGGT 1213
Query 1146 CAGAATAAGAGCAAAGATCAGACGAAGCAGTATGTTCATATGTTGAATTCGACTCTTACC 1205
||||| |||||||| || ||||| ||||||||||| |||||| |||||||||| |||||
Sbjct 1214 CAGAAAAAGAGCAATGAGCAGACAAAGCAGTATGTGCATATGCTGAATTCGACACTTACT 1273
Query 1206 GCAACAGAGAGGACAATTTGCTGCATTCTTGAGAACTACCAGCGAGAGGATGGTGTTGAT 1265
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1274 GCAACAGAGAGGACCATTTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGAC 1333
Query 1266 ATTCCTGACGTTCTGCAGCC-TTATATGGGCGGCA-AGAAGTTTATGCCTTTCAA 1318
|||||||| ||||||||||| || ||||||||| | ||| |||| ||||||||||
Sbjct 1334 ATTCCTGAGGTTCTGCAGCCGTT-TATGGGCGG-AGAGACGTTTTTGCCTTTCAA 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5