BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942354

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27430.1 | Symbols:  | Signal peptidase subunit | chr5:96873...   911    0.0  


> AT5G27430.1 | Symbols:  | Signal peptidase subunit | chr5:9687378-9689420 
FORWARD LENGTH=831
Length=831

 Score =  911 bits (493),  Expect = 0.0
 Identities = 523/538 (97%), Gaps = 0/538 (0%)
 Strand=Plus/Plus

Query  2    AAACTCCGATTGAAAGAGGATGCATTCTTTTGGTTACAGAGCCAATGCTCTGCTCACATT  61
            |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct  74   AAACTCCGATTGAAAGAGGATGCATTCTTTTGGTTACAGAGCGAATGCTCTACTCACATT  133

Query  62   CGCCGTCACAATTCTAGCTTTCATTTGCGCGATTGCTTCCTTCTCTGATAACTTCAGTAA  121
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  134  CGCCGTCACGATTCTAGCTTTCATTTGCGCGATTGCTTCCTTCTCTGATAACTTCAGTAA  193

Query  122  CCAAAATCCCTCTGCTCAGATCCAGATATTGAATATCAATTGGTTTCAGAAGCAACCCCA  181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  194  CCAAAATCCCTCTGCTCAGATCCAGATATTGAATATCAATTGGTTTCAGAAGCAACCTCA  253

Query  182  TGGAAATGATGAGGTCAGCTTGACACTGAACATAACAGCAGACTTGCAGTCACTTTTTAC  241
            ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct  254  TGGAAATGATGAGGTCAGCTTGACACTGAACATAACAGCTGACTTGCAGTCACTATTTAC  313

Query  242  TTGGAACACAAAGCAGGTATTTGCTTTTGTAGCAGCAGAGTATGAAACCTCCAAGAACGC  301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  314  TTGGAACACAAAGCAGGTATTTGCTTTTGTAGCAGCAGAGTATGAAACCTCCAAGAACGC  373

Query  302  CCTCAATCAGGTTTCGCTATGGGATGCCATAATACCCGAGAAAGAGCATGCCAAATTCTG  361
            ||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct  374  CCTGAATCAGGTTTCACTATGGGATGCCATAATACCAGAGAAAGAGCATGCCAAATTCTG  433

Query  362  GATACAAATCTCAAACAAGTACCGTTTCATAGATCAGGGACACAACCTCCGAGGGAAGGA  421
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  434  GATACAAATCTCAAACAAGTACCGTTTCATAGATCAGGGACATAACCTCCGAGGGAAGGA  493

Query  422  CTTCAACTTGACATTGCACTGGCATGTTATGCCCAAGACGGGCAAGATGTTTGCTGACAA  481
            ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct  494  CTTTAACTTGACATTGCACTGGCATGTCATGCCCAAGACAGGCAAGATGTTTGCTGACAA  553

Query  482  AATAGTTATGTCTGGTTATCGTTTACCCAATGCATACAGATGATGATGAAGAGCCTCC  539
            ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct  554  AATAGTTATGTCTGGTTATCGTTTACCTAATGCATACAGATGAAGATGAAGAGCCTCC  611



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26071522293


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5