BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942355
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27420.1 | Symbols: CNI1, ATL31 | carbon/nitrogen insensitiv... 1624 0.0
> AT5G27420.1 | Symbols: CNI1, ATL31 | carbon/nitrogen insensitive
1 | chr5:9684072-9685561 FORWARD LENGTH=1490
Length=1490
Score = 1624 bits (879), Expect = 0.0
Identities = 1069/1159 (92%), Gaps = 20/1159 (2%)
Strand=Plus/Plus
Query 2 TTTTGGGATTCCAGAGCTAACAATGGATCCCATAAAGCAAATCTCTTTACTAGTTCTTCT 61
|||||||| |||||| |||| ||||||||||||||| || |||||||||| ||||||| |
Sbjct 26 TTTTGGGACTCCAGAACTAATAATGGATCCCATAAAACACATCTCTTTACCAGTTCTTGT 85
Query 62 CTTCTTTCTACTTTTATCCGGGTCGGCGGGTCAGCCCGGATCCCCAAACCCGAGA-AGTG 120
||| |||||||| ||||||| |||||||||||| |||||| |||| ||| |||| | ||
Sbjct 86 CTTGTTTCTACTATTATCCGTGTCGGCGGGTCAACCCGGAACCCCGGACCAGAGACA-TG 144
Query 121 ACCAATATGCTTACAGCGGCAGTCTTAGTCCCGCCATGGCTGTTGTCGTTGTAGTCGTCA 180
||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 145 ACCCGTATGCTTACAGCGGCAGTCTAAGTCCAGCCATGGCTGTTGTCGTTGTAGTTGTCA 204
Query 181 TCGCAGCTCTCTTCTTTATGGGCTTCTTCACCGTCTACATACGCCACTGTACTGGCGCAG 240
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 205 TCGCAGCTCTCTTCTTCATGGGCTTCTTCACCGTCTATATACGTCACTGTACTGGCGCAG 264
Query 241 TAGACGGCAACGTTACTCCTACAGGAGGAGCGAGGAGGAGAGTAACAAACGCAACGGTGG 300
||||||| | |||||||||| |||||||||| ||||||||||| || ||||||||||| |
Sbjct 265 TAGACGGTAGCGTTACTCCTGCAGGAGGAGCTAGGAGGAGAGTGACGAACGCAACGGTTG 324
Query 301 CGCGTGGGTTAGACGCGGAGACTATCGAGACGTTTCCGACTTTTGTATACTCGGAAGTGA 360
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 325 CGCGTGGGTTAGACGCGGAGACGATCGAGACGTTTCCGACTTTTGTTTACTCAGAAGTGA 384
Query 361 AGACTCAGAAGATTGGTAAAGGAGCGTTGGAGTGTGCGATTTGTTTGAATGAGTTTGAAG 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 AGACACAGAAGATTGGTAAAGGAGCGTTGGAGTGTGCGATTTGTTTGAATGAGTTTGAAG 444
Query 421 ACGACGAAACGCTGCGTTTGTTACCTAAATGTGATCACGTGTTTCATCCTCATTGTATAG 480
|||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 445 ACGATGAAACGCTGCGTCTGTTGCCTAAATGTGATCACGTGTTTCATCCTCATTGTATCG 504
Query 481 GCGCGTGGCTTGAAGGTCACGTGACTTGTCCGGTTTGTCGGACTAATCTCGCCGAACAGA 540
||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 505 GCGCGTGGCTTCAAGGTCACGTGACTTGTCCGGTTTGTCGGACTAATCTTGCTGAAC--- 561
Query 541 AGATTGAACCGGTTGAACCGGAAGCGGTGGTGGAAATTGATCTTGAAGCGCAGCAGCAAG 600
||| | || ||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 562 AGA-CG--CC---TGAACCGGAAGTGGTGGTGGAAACCGATCTTGAGGCGCAGCAGCAAT 615
Query 601 CGGCGGTTCCTGAACCGGTGGTGGAACTACCACGTG-TAAATTTCTCGAGGTCGCATACG 659
|||||||||||| ||||||||||||||| ||||||| |||| ||| ||||||||||||||
Sbjct 616 CGGCGGTTCCTGTACCGGTGGTGGAACTTCCACGTGTTAAA-TTCCCGAGGTCGCATACG 674
Query 660 AC-GGGTCATTCGGTGGTTTTACCGGGAGAAAGTACCGACCGGTTTACGCTTAGAGTACC 718
|| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 675 ACAGGG-CATTCGGTGGTTTTACCGGGAGAGAGTACCGACCGGTTTACGCTTAGAGTACC 733
Query 719 GGAAGAATTAAGGAAGAAGATAATGGCGAATTGGAAATTGAACCGGTCGAATAGTGTTTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GGAAGAATTAAGGAAGAAGATAATGGCGAATTGGAAATTGAACCGGTCGAATAGTGTTTT 793
Query 779 TGTTCTACCGAGAGGAGGAAGCTCGAGGAGTGGTAAACCGGTTGACCGGTCGAGAGCTAA 838
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 794 TGTTTTACCGAGAGGAGGAAGCTCGAGGAGTGGTAAACAGGTTGACCGGTCGAGGGCTAA 853
Query 839 ATCGGACCGGTGGTTATTCCGTAAAACCCCGTCGTTTCTGTGGCGGAACCGGGATGATGG 898
||||||||||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 854 ATCGGACCGGTGGTTGTTCCGTAAAACTCCGTCGTTTCTATGGAGGAACCGGGATGATGG 913
Query 899 TTCGATTAGGCTTGGTGGAACCGGTAGCGTTAGAGGAAATTCAGTAACAAGTCCGACCGG 958
|||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 914 TTCGATTAGGCTAGGTGGTACCGGTAGTGTTAGAGGAAATTCAGTAACAAGTCCGAGCGG 973
Query 959 TGACTCGGTACGAGCAGACCGGTGGGCTTTTCTAAGAAACCCATCGTTTCTCTGGAGGAA 1018
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 974 TGACTCGGTACGAGCAGACCGGTGGGCTTTTCTTAGAAACCCATCGTTTCTCTGGAGGAA 1033
Query 1019 TACGACGCCGGTTCCTTCGCCGAGAGTTGAAGTCAATAA---GGACGGTGAAGGAACATC 1075
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1034 TACGACGCCGGTTCCTTCGCCGAGAGTTGAAGTCAATAATAAGGACGGTGAAGGAACATC 1093
Query 1076 GTCGGTTCAACATACCGGTACAGTTGGTTCAGCTAGCGGTTCCGTTAGATTACCGGTTTA 1135
||| |||||||||| |||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 1094 GTCAGTTCAACATATCGGTACAGTTGGTTCAACTAGCGGTTCCCTTAGGCTACCGGTTTA 1153
Query 1136 GTTGGTTTGGTGATGTTTT 1154
|| | || |||||||||||
Sbjct 1154 GT-G-TTCGGTGATGTTTT 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56726615850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5