BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942357
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27400.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1703 0.0
> AT5G27400.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:9676334-9678503
FORWARD LENGTH=1356
Length=1356
Score = 1703 bits (922), Expect = 0.0
Identities = 1076/1152 (93%), Gaps = 4/1152 (0%)
Strand=Plus/Plus
Query 1 GGAGCTTGACACGGCGAAGTCATGGCGGCGGAGACGGAGGCGGAGTCACAGTACCTTCAT 60
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||| ||
Sbjct 8 GGAGCTTGACACGGTGAAGTCATGGCGGCGGAGACGGAGGCAGAATCACAGTACCTTAAT 67
Query 61 GTACTCTCTGCTTTCCTCGCCATGGAACCGGTGGACTCCGTTATCACTCTCGCTAGAGGG 120
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 68 GTACTCTCTGCTTTCCTCGCCATCGAACCGGTGGACTCCGTCATCACTCTCGCTAGAGGG 127
Query 121 TGTACTGGAGGATCAATTACTGAGAACGCCCAGAGATTTTTCTGGGAAATTTGTGTTAAA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 128 TGCACTGGAGGATCAATTACTGAGAACGCCCAGAGATTTTTCTGGGAAATTTGCGTTGAA 187
Query 181 GCTGCTGCGAATGGTAATGCAACATATGCGAAGAAGTTACTGAAGAAACTCATAAATGAA 240
||||||||||||||||| | | |||| |||||||||||||||||||||||||||||||||
Sbjct 188 GCTGCTGCGAATGGTAACGGATCATACGCGAAGAAGTTACTGAAGAAACTCATAAATGAA 247
Query 241 GTTGAGTTAGAGAATGGTGAAGTATTGGATGAAGTGTATGAAGAGTATGCTCTTTACATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GTTGAGTTAGAGAATGGTGAAGTATTGGATGAAGTGTATGAAGAGTATGCTCTTTACATG 307
Query 301 TTAACTTCTAAGGAAGATACATTGGTGAAAGAAAACATAAGGATTACCAAATTCATCTCT 360
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||
Sbjct 308 TTAACTTCTAAGGAAGATATATTGGTGAAAGAAAACATAAGGATAACCAAATTCATTTCT 367
Query 361 TTTCTATTCCCACAAGGTTCGTACAAACACCCGAGTTGTCCAAGGTCGAGGAAATTAGTT 420
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TTTCTTTTCCCTGAAGGTTCGTACAAACACCCGAGTTGTCCAAGGTCGAGGAAATTAGTT 427
Query 421 ATTCCGCTGCAATGTTCGTTGAACATGCTTGAAGGAGATACTGGGTGTTCCATCTGGCCG 480
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 428 ATTCCGCTGCATTGTTCGTTGAACATGCTTGAAGGAGATACCGGGTGTTCCATCTGGCCA 487
Query 481 TCAAGTCTGTTTCTGTCAGAGTTTGTTCTGTCATTTCCAGAGTTATTCGCCAATAAATCC 540
|| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||
Sbjct 488 TCGAGTCTGTTTCTGTCAGAATTTGTTTTGTCATTTCCAGAGTTATTCGCCAATAAAGCC 547
Query 541 TGTTTTGAGGTTGGTTCCGGAGTTGGCATGGTCGGAATTTGCCTTGCACATGTGAAGGCC 600
||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 548 TGTTTTGAGGTTGGTTCTGGAGTTGGTATGGTCGGGATTTGCCTTGCACATGTAAAGGCC 607
Query 601 AAAAAGGTGATACTAACAGATGGAGATCTCTTAACTCTGTCTAACATGAAGCTTAATTTG 660
||| |||||||||||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 608 AAAGAGGTGATACTAACAGACGGAGATCTTTTAACTTTGTCTAACATGAAGCTTAATTTG 667
Query 661 GAGAGGAATCACTTAAACTATGATGACGAGTTGCTCAAACAACCTGGAGAAGCTCAGAGT 720
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 668 GAGAGAAATCACTTAAACTATGATGACGAGTTTCTCAAACAACCCGGAGAAGCTCAGAGT 727
Query 721 ACACAAGTTAAATGCATTCATCTTCCGTGGGAAACTGCATCGGAAAGTGAACTGAGTGAA 780
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||| || ||
Sbjct 728 ACACGAGTTAAATGCACTCATCTTCCATGGGAAACTGCATCGGAAAGTGAACTAAGCCAA 787
Query 781 TATCGTCCAGATATTATTCTAGGCGCAGATGTAATCTATGACCCGTCATGTCTCCCTCAT 840
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 788 TATCGTCCAGATATTGTTCTAGGCGCAGATGTAATCTATGATCCGTCATGTCTCCCTCAT 847
Query 841 CTACTTAGGGTTCTCGTAGCCCTTCTAA-GTAAACCACCAAAAAGAG-ACAATGGCTCTC 898
|||||| |||| || ||||||||| ||| | || ||||| ||||||| | ||||||||||
Sbjct 848 CTACTTCGGGTGCTAGTAGCCCTTTTAAAG-AACCCACCCAAAAGAGGA-AATGGCTCTC 905
Query 899 TTGAGACTGAAGACAGTGACACGACACCACAAGGACACAGCCCCAAGGTGGCTTATATTG 958
| |||||||||||||| |||||||||| | ||| |||||| ||| |||||||||||| |
Sbjct 906 TCGAGACTGAAGACAGAGACACGACACAAGAAGAACACAGTCCCGCGGTGGCTTATATCG 965
Query 959 CATCTGTAATTCGCAATGCAGACACTTTTAATGTGTTCTTGACACTTGTAGACCAAATGG 1018
||||||| || ||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 966 CATCTGTGATCCGCAATGTAGACACTTTTAATGTGTGCTTGACACTTGCAGACCAAATGG 1025
Query 1019 ACCTTTCCATCACAGACGTGACCGCAGAACTTAGGCCTCCCTTCGAGCTTTTACCATATA 1078
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1026 ACCTTTCCATCACAGACGTGACCGCAGAACTTACGCCTCGCTTTGAGCTTTTACCATATA 1085
Query 1079 TGCATTCATATGACCGCTCAAGCGTTCGGCTCTTTTCCATATCCTCCAGATGATGTAATT 1138
||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||||
Sbjct 1086 TGCATTCGTATGACCGCTCAACCGTTCGGCTCTTCTCCATATCCTCCAGATAATGTAATT 1145
Query 1139 CTTTCAGAAGCA 1150
||||||||||||
Sbjct 1146 CTTTCAGAAGCA 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5