BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942358
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27390.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem II... 1188 0.0
> AT5G27390.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem
II reaction center PsbP family protein | chr5:9674391-9676189
REVERSE LENGTH=1040
Length=1040
Score = 1188 bits (643), Expect = 0.0
Identities = 728/769 (95%), Gaps = 5/769 (1%)
Strand=Plus/Plus
Query 2 tcttcttcttcttcctcttctcatggccattctacttcactctctctctcttcATCCACC 61
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 50 TCTTCTTCTTCTTCCTCTTCTCATGGCCATTCTACTTCACTCCCTCTCTCTTCATCCACC 109
Query 62 AAACCCTAAACCTCCAAACCCTAATAAACCCAAAATTGTCTCTCCTTTTGCAACTTTTCG 121
|||||||||||||| ||||||| |||||||||||||| ||||| ||| ||| || |||||
Sbjct 110 AAACCCTAAACCTCAAAACCCTTATAAACCCAAAATTCTCTCTTCTTCTGCTACCTTTCG 169
Query 122 GAGAGATGTGGTGCTTAGAACAGCATCTCTCTGTTTCGTCTCTTTCATCATTCAAAACCC 181
||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 170 GAGAGATGTGGTGCTTAGAACAGCATCACTCTGTTTCGTCTCCTTCATCTTTCAAAACCA 229
Query 182 AATT-CATGAGTCAATAGCCGATCCTTTGAAGTCTTCCAAACCGCTAAGACTCGGCATTG 240
|||| || |||||| |||| ||||||||||||||| |||||||| || ||||||||||||
Sbjct 230 AATTCCA-GAGTCATTAGCTGATCCTTTGAAGTCTACCAAACCGTTACGACTCGGCATTG 288
Query 241 CCAACACTAAGTCTTGGTTCCAGTTCTTTGGTGA-TGGGTTCGCTATTAGGGTTCCTCCT 299
| |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 289 CGAACACTAAGTCTTGGTTCCAGTACTTTGGT-AGTGGGTTCGCTATTAGGGTTCCTCCT 347
Query 300 GACTTTGAAGACGTCAATGAGCCTGAGGATTACTCTGCGGGATTGTCACTCTATGGGGAC 359
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 348 GACTTTGAAGACGTCAATGAGCCTGAGGATTACTCTGCGGGATTGTCTCTCTATGGTGAC 407
Query 360 AAGGCAAAGCCGCAAACTTTCGCCGCCCGGTTCCAAACTCCTGATGGATCAGAAGTTTTG 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AAGGCAAAGCCACAAACTTTCGCCGCCCGGTTCCAAACTCCTGATGGATCAGAAGTTTTG 467
Query 420 AGCGTAGTCATTCGCCCTTCAAATCAACTTAAGATCACTTTCTTAGAGGCTAAAGATATA 479
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AGTGTAGTCATTCGTCCTTCAAATCAACTTAAGATCACTTTCTTAGAGGCTAAAGATATA 527
Query 480 TCCGATTTGGGATCATTAAAGGCAGCTGCAAGACTCTTTGTTCCAGGTGCCGCGACTATT 539
|| |||||||||||||| ||||||||||||||||| |||||||||||||| || || |||
Sbjct 528 TCTGATTTGGGATCATTGAAGGCAGCTGCAAGACTTTTTGTTCCAGGTGCGGCAACAATT 587
Query 540 TACTCTGCTCGTACAATCAAGGTAAAGGAGGAAGAAGGTTTAAGAAATTACTACTTCTAC 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 588 TACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTTAAGAAATTACTACTTCTAC 647
Query 600 GAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAGGTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAGGTT 707
Query 660 TATATCGCTGGAGCAGCTGCACCGGAATCCAAATGGAAAGACGATGAGTTAAAGCTTCGA 719
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 708 TATATCGCTGGAGCAGCTGCACCGGAATCCAAATGGAAAGACGATGAGTTGAAGCTCCGA 767
Query 720 TCTGCTGCCATTTCTTTCACAATCCTATAATCGAAAAGGCAGCTTCTTC 768
|||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 768 TCTGCTGCCATTTCTTTCACTATTCTATAGTC-AAAAGGCAGCTTCTTC 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5