BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942359
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27395.1 | Symbols: | Mitochondrial inner membrane transloc... 1550 0.0
> AT5G27395.1 | Symbols: | Mitochondrial inner membrane translocase
complex, subunit Tim44-related protein | chr5:9671496-9674256
REVERSE LENGTH=1462
Length=1462
Score = 1550 bits (839), Expect = 0.0
Identities = 938/986 (95%), Gaps = 5/986 (1%)
Strand=Plus/Plus
Query 1 TTTCTTCACACTA-ATCAAAAATGGCGCTCGTAAGAAGATTTCAAACAGTTCGTTCTTTG 59
||||||||| | | || ||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 152 TTTCTTCAC-CCAGATAAAAAATGTCGCTCGTGAGAAGATTTCAAACAGTTCGTTCTTTA 210
Query 60 TTGAAAACAGCTGGATCAAGAGAATCTTCTTCTCTTCCATTTCGGAGTGGAAATGAGTCC 119
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 211 TTGAAAACAGCTGGATCAAGAGAATCTTCTTCTCTTCCATTTAGGAATGGAAATGAGTTC 270
Query 120 TCTTTGATTCAAATTGGAGATGATTTCAGATTTGGGTGTTGGAGAAGCTATCATTCTTCT 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 271 TCTTTGATTCAAATTGGAGATGATTTCAGATTTGGTTGTTGGAGAAGCTATCATTCTTCT 330
Query 180 CTTTGTCAGGTTCCTGAAGCTCATGGAAAAAGTGTGTATTCACGTTTATATCAAGGCCAC 239
|||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| | |
Sbjct 331 CTTTGTCACGTTCCTGAAGCTCATGGAAAAAGTGCGTATTCACGTTTATATGAAGG-C-C 388
Query 240 AACAACGCCAACACACATTTGCTTCGATCTACAATGATTGCAGAGTCTTTGCCGTTTACG 299
||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 389 -ACAGCGTCAATACACATTTGCTTCGATCTACAATGATTGCAGAGTTTTTGCCGTTTATG 447
Query 300 AACGAAAAAAGGTCTGCTACAACGCAAGTAAAGGCACCACCTCAGCTACAGAAAACGGGT 359
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 448 AATGAAAAAAGGTCTGCTACAACGCAAGTTAAGGCTCCACCTCAGCTACAGAAAACGGGT 507
Query 360 GCCGTTAGAGTGTCAATGGTAAGTCCTGGATTTGTATATGAGCCCTATGCACTCCAGGAG 419
|| ||||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 508 GCTGTTAGAGTGTCGATGGTAAGTCCTGGATTTGTATATGAACCCTATGCGCTCCGGGAG 567
Query 420 AAAATCTCGATTTGGCGGAGATGTTTTACAAGAAGTGGTTGGCGAAGAACGAAAGAGGAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 AAAATCTCGATTTGGCGGAGATGTTTTACAAGAAGTGGTTGGCGAAGAACGAAAGAGGAT 627
Query 480 TTTATACGGGAGCTAAGAAGTGCCTACGCTATTGCTAAGTTAAGAAAGACTGGGTATTCA 539
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 628 TTTATACGGGAGCTAAGAAGTGCCTACGCTATCGCTAAGTTAAGAAAGACTGGGTATTCG 687
Query 540 AAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAGATTAATATTCTGATGGCC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 688 AAGAATACGTTCTACATAGAAGCACTAGAGTTATACAAACAGATTAATATTCAGATGGCC 747
Query 600 AATGGTGACAAGAAGACGATAAGGAAAAATGTAACTGAAAGAATGTATTCTGCACTGAAG 659
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 748 AATGGTGAGAAGAAGACGATAAGGAAAAACGTAACTGAAAGAATGTACTCTGCACTGAAG 807
Query 660 AACGAAATTAAACAAAGAGAAGCCATGTGGGATGGTGTTTACTGGGAAATGATTGAGCCG 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 808 AACGAAATTAAACAAAGAGAAGCCATGTGGGATGGTGTTTACTGGGAAATGGTTGAGCCG 867
Query 720 GTTGTCAAGATCCGAACTTTACAAGCTCGACTGATCGGAATTGACCGGACAGACCTTAAG 779
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 868 GTTGTCAAAATCCGAACTTTACAAGCTCGACTGATTGGAATTGACCGGACGGACCTTAAG 927
Query 780 AAAGCATTCATACAACTGACACTAGAGTTTCTGACAAAGCAGAAATTCGAAGCATACGAT 839
|||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 928 AAAGCATTTATACAACTGACACTCGAGTTTCTGACGAAGCAGAAATTTGAAGCATACGAT 987
Query 840 GCAAAAGGCAATGTAGTAGCTGGAGACAAGAACAAAGAGGTGCTTGTACGTGACATATGG 899
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 988 GCAAAAGGCAATGTAGCAGCTGGAGATAAGAACAAAGAGGTGCTTGTACGTGACATATGG 1047
Query 900 GTCTTTGAGAAGTCCCTTTTCCATACAGGAGCTTACTGGCGGCTCTGTGGCCGGATCAAA 959
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 GTCTTTGAGAAGTCTCTTTTCCATACAGGAGCTTACTGGCGGCTCTGTGGCCGGATCAAA 1107
Query 960 TTATGAAGTATTGCAACATTGTGGAC 985
||||||||| ||||||||||||||||
Sbjct 1108 TTATGAAGTTTTGCAACATTGTGGAC 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5