BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942361
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27370.1 | Symbols: | Protein of unknown function (DUF679) ... 832 0.0
> AT5G27370.1 | Symbols: | Protein of unknown function (DUF679)
| chr5:9667311-9667886 FORWARD LENGTH=576
Length=576
Score = 832 bits (450), Expect = 0.0
Identities = 537/579 (93%), Gaps = 6/579 (1%)
Strand=Plus/Plus
Query 22 ATGGAGGCGTCGTTCATTAGATCTCTACCCTCCGCCGGAAACTTCGCCAACCTCTTGCCG 81
||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||
Sbjct 1 ATGGAGGCGTCGTTCATTAGATCGCTACCGTCTGCCGGAAACTTCGCCAACCTATTGCCG 60
Query 82 ACCGGAACCGCCCTCATATTCGAAACCCTACTACCGTCTTTCTCAAATGGCGGCGAGTGC 141
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ACCGGGACCGCCCTCATATTCGAAACCCTACTACCGTCTTTCTCCAATGGCGGCGAGTGC 120
Query 142 AACAATAAACCCGCCAATAAACTCCTCACCATTTCCCTCATCTCCTTTTGCGCCGCGGCT 201
||||| ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 121 AACAACAAACCCGTCAATAAACTCCTCACCATTACTCTCATCTCCTTTTGCGCCGCGGCT 180
Query 202 TGCTTCTTCTCCTCATTCACCGACTCATATGTAGGCCAAGATGGCCGCATTTACTACGGA 261
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCTTCTTCTCCTCCTTCACCGACTCATATGTAGGCCAAGATGGCCGCATTTACTACGGA 240
Query 262 ATTGCCACCTCGAACGGTCTCTACATCCTCAACGACTATCCCA-AGGACGGTTATGATCC 320
||||||||||| ||||||||| ||||||||||||||||||| | | || |||||||||||
Sbjct 241 ATTGCCACCTCTAACGGTCTCCACATCCTCAACGACTATCC-AGACGAAGGTTATGATCC 299
Query 321 GGAATCCGGCTTAACGGCTGACAAGAAA-AGGAGATACAAGCTGAGTTTTGTGGATTTCG 379
|| ||||||||||||||||| |||| | || ||||| ||||| |||||||| |||||||
Sbjct 300 AGAGTCCGGCTTAACGGCTGATAAGAGAGAG-AGATATAAGCTCAGTTTTGTAGATTTCG 358
Query 380 TGCATGCTTTCGTGTCAGTGGTCGTGTTCTTGGCGTTAGCCGTAGAGAGTTCGGATTTTC 439
|||||||||||||||| || |||||||||| ||||||||||||||||| ||||||||||
Sbjct 359 TGCATGCTTTCGTGTCGGTTATCGTGTTCTTAGCGTTAGCCGTAGAGAGCTCGGATTTTC 418
Query 440 GGAGGTGTTTGCTCCCGGAGGGCGATGAAAACAGTTGGGGTGGTCATTTCGTACTTTTGA 499
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||
Sbjct 419 GGAGGTGTTTGCTCCCGGAGGACGATGAAAACAGTTGGGGTGGTCATTTTGTACTTATGA 478
Query 500 TTAAGTATTTTGCGGTTATGGTGTTGACAATGGCGAGCTTCTTCTTTGCTATCTTTCCCT 559
| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 TCAAGTACTTTGCTGTTATGGTGTTGACAATGGCAAGCTTCTTCTTTGCTATCTTTCCCT 538
Query 560 CAAAACGGAGAGGCATCGGA-TATACGGACATTCGTTGA 597
|||||||||||||||||||| | | | ||||||||||||
Sbjct 539 CAAAACGGAGAGGCATCGGAATTT-CAGACATTCGTTGA 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29839083318
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5