BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942362
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18760.1 | Symbols: AtRLP51, RLP51 | receptor like protein 5... 616 1e-175
> AT4G18760.1 | Symbols: AtRLP51, RLP51 | receptor like protein
51 | chr4:10308163-10309458 REVERSE LENGTH=1296
Length=1296
Score = 616 bits (333), Expect = 1e-175
Identities = 431/478 (90%), Gaps = 7/478 (1%)
Strand=Plus/Plus
Query 1 TCTTCGTTATCATCGGAAACATGAACAAGATCGTCTCTTTGACAATCTCTCACGCAAATC 60
||||||||||| | ||||| ||| || |||||||||||||||||||||| ||||||||||
Sbjct 545 TCTTCGTTATCCTAGGAAATATGCACGAGATCGTCTCTTTGACAATCTCACACGCAAATC 604
Query 61 TCTCCGGAATCATCCCAAAATCTTTCCACTCAAATCTCACTTTCATCGATTTATCTGACA 120
||||||||| |||||| ||||| ||||||||||||||||| ||||| || ||||| ||||
Sbjct 605 TCTCCGGAAACATCCCTAAATCATTCCACTCAAATCTCACATTCATTGACTTATCAGACA 664
Query 121 ATCTACTCAAAGGCTCAATACACACTTCCATTACTCTGTTCTCAAACCTAAAGTCTCTAA 180
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 665 ATCTACTCAAAGGCTCAATACCCACTTCCATTACTCTGCTCTCAAACCTAAAGTCTCTAA 724
Query 181 ATTTATCCAAAAACTCTATCTCCGGCGACATACCCGATTCAATCGACGACCTAATATCAC 240
|||||||||||||| | |||||||| ||||||||||| ||||||| |||||||| || |
Sbjct 725 ATTTATCCAAAAACACCATCTCCGGAGACATACCCGACTCAATCGGTGACCTAATCTC-C 783
Query 241 -TAGAATACCTATCTTTATCATTCAAA-AAGGTATCAGGACCAATCCCAGATCCAATCTC 298
|| || ||||||||||||| ||||| ||| |||||||||||||||||||| |||||||
Sbjct 784 TTAAAAAACCTATCTTTATC-CTCAAACAAGCTATCAGGACCAATCCCAGATTCAATCTC 842
Query 299 CTCAATTCAAGAGCTTACACACTTAGATCTGAGTGGAAACCAACTAAACGGCACCGTTCC 358
|| |||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 843 ATCCATTCCAGAGCTTACACACTTAGATCTGAGTGGGAACCAACTAAACGGCACCATTCC 902
Query 359 AAGATTCATCTCCAAGGTTAAGTATCTCACACACTTGAATCTAGCTAACAATGCCTTCCA 418
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 903 AAGATTCATCTCCAAAATGAAGTATCTCACACACTTGAATCTAGCTAACAATGCCTTCCA 962
Query 419 TGGAGTTCTACCGGTT-A-TGCAAGCTTCATCAAAAACCTCGAAGTGTTCAAAATCGG 474
|||||||||||| || | ||| ||||| ||||| || ||||||||||||||||||||
Sbjct 963 TGGAGTTCTACCA-TTCAATGCGAGCTTTATCAAGAATCTCGAAGTGTTCAAAATCGG 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5