BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942366 Length=370 Score E Sequences producing significant alignments: (Bits) Value AT1G43720.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 268 2e-71 AT3G42870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 257 4e-68 AT3G30520.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 178 3e-44 > AT1G43720.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42870.1); Has 51 Blast hits to 51 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16495080-16496078 FORWARD LENGTH=945 Length=945 Score = 268 bits (145), Expect = 2e-71 Identities = 204/233 (88%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 113 TCAAGATGATTACGATGAATTTAAAAAGGCTGAAGCGATATTCATTGCGCTAAACCTTTC 172 |||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||| | Sbjct 390 TCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCTT-C 448 Query 173 CAAA-CACACTAGATTTTATTGGACATGCATTAGTACACTCAAGGAGCAAGTATTTTGGC 231 | || |||||||||||| ||||| ||||||||| | |||| ||||||| ||||||||||| Sbjct 449 CTAAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGC 508 Query 232 GTAAGTATTTCATTGACATAGCTGAAAGCACCGATGAGGATAAGCTACAACTGTTAGAAA 291 |||||||||| ||||| ||| ||| ||||||||| ||||||||| | |||||||||||| Sbjct 509 GTAAGTATTTGATTGATATAACTGCAAGCACCGACGAGGATAAGGTCCAACTGTTAGAAG 568 Query 292 CTATGACGGGTGTTTTACGGAACAACAAAAATGTGTCACAACAGGTAGGTTCA 344 ||||||| ||||||| ||| |||||| || ||||| || ||||| |||||||| Sbjct 569 CTATGACTGGTGTTTCACGTAACAACCAAGATGTGCCAAAACAGTTAGGTTCA 621 > AT3G42870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30520.1); Has 47 Blast hits to 47 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14949456-14951279 FORWARD LENGTH=939 Length=939 Score = 257 bits (139), Expect = 4e-68 Identities = 201/232 (87%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 114 CAAGATGATTACGATGAATTTAAAAAGGCTGAAGCGATATTCATTGCGCTAAACCTTTCC 173 ||||||||||||||||||||||||||||| ||||||||||| || | ||| | ||| || Sbjct 397 CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCCCACTAGATCTTCCC 456 Query 174 AAACACACTAGATTTTATTGGACATGCATTAGTACACTCAAGGAGCAAGTATTTTGGCGT 233 || |||||||||||||||||| ||||||||| | |||| |||||| ||||| ||||||| Sbjct 457 AAGCACACTAGATTTTATTGGGCATGCATTAATGCACTTGAGGAGCTAGTATATTGGCGT 516 Query 234 AAGTATTTCATTGACATAGCTGAAAGCACCGATGAGGATAAGCTACAACTGTTAGAAACT 293 |||||||||||||| ||||||| ||||||||| ||||||||| |||||||||||||| || Sbjct 517 AAGTATTTCATTGATATAGCTGCAAGCACCGACGAGGATAAGGTACAACTGTTAGAAGCT 576 Query 294 ATGACGGGTGTTTTACGGAACAACAAAAATGTGTCACAACAGGTAGGTTCAG 345 ||||| ||||||| | |||||| || ||||| || ||||| ||||||||| Sbjct 577 ATGACTGGTGTTTCCCCCAACAACCAAGATGTGCCAAAACAGTTAGGTTCAG 628 > AT3G30520.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42870.1); Has 70 Blast hits to 70 proteins in 9 species: Archae - 0; Bacteria - 8; Metazoa - 5; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:12130340-12132173 FORWARD LENGTH=1194 Length=1194 Score = 178 bits (96), Expect = 3e-44 Identities = 141/163 (87%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 114 CAAGATGATTACGATGAATTTAAAAAGGCTGAAGCGATATTCATTGCGCTAAACCTTTCC 173 ||||||||||||||||||||||||||||| ||||||||||| | || ||| | ||| || Sbjct 721 CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTACCGCCCTAGATCTTCCC 780 Query 174 AAACACACTAGATTTTATTGGACATGCATTAGTACACTCAAGGAGCAAGTATTTTGGCGT 233 || |||||||||||| ||||| ||||||||| | |||| ||||||| ||||||||||| | Sbjct 781 AAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGCCT 840 Query 234 AAGTATTTCATTGACATAGCTGAAAGCACC-GATGAGGATAAG 275 |||||||||||||| ||||||| |||| || || |||||||| Sbjct 841 AAGTATTTCATTGATATAGCTGCAAGC-CCTGACAAGGATAAG 882 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17392641154 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5