BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942366
Length=370
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43720.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 268 2e-71
AT3G42870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 257 4e-68
AT3G30520.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 178 3e-44
> AT1G43720.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G42870.1);
Has 51 Blast hits to 51 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 49; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16495080-16496078
FORWARD LENGTH=945
Length=945
Score = 268 bits (145), Expect = 2e-71
Identities = 204/233 (88%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 113 TCAAGATGATTACGATGAATTTAAAAAGGCTGAAGCGATATTCATTGCGCTAAACCTTTC 172
|||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||| |
Sbjct 390 TCAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCTT-C 448
Query 173 CAAA-CACACTAGATTTTATTGGACATGCATTAGTACACTCAAGGAGCAAGTATTTTGGC 231
| || |||||||||||| ||||| ||||||||| | |||| ||||||| |||||||||||
Sbjct 449 CTAAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGC 508
Query 232 GTAAGTATTTCATTGACATAGCTGAAAGCACCGATGAGGATAAGCTACAACTGTTAGAAA 291
|||||||||| ||||| ||| ||| ||||||||| ||||||||| | ||||||||||||
Sbjct 509 GTAAGTATTTGATTGATATAACTGCAAGCACCGACGAGGATAAGGTCCAACTGTTAGAAG 568
Query 292 CTATGACGGGTGTTTTACGGAACAACAAAAATGTGTCACAACAGGTAGGTTCA 344
||||||| ||||||| ||| |||||| || ||||| || ||||| ||||||||
Sbjct 569 CTATGACTGGTGTTTCACGTAACAACCAAGATGTGCCAAAACAGTTAGGTTCA 621
> AT3G42870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G30520.1);
Has 47 Blast hits to 47 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14949456-14951279
FORWARD LENGTH=939
Length=939
Score = 257 bits (139), Expect = 4e-68
Identities = 201/232 (87%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 114 CAAGATGATTACGATGAATTTAAAAAGGCTGAAGCGATATTCATTGCGCTAAACCTTTCC 173
||||||||||||||||||||||||||||| ||||||||||| || | ||| | ||| ||
Sbjct 397 CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTATCCCACTAGATCTTCCC 456
Query 174 AAACACACTAGATTTTATTGGACATGCATTAGTACACTCAAGGAGCAAGTATTTTGGCGT 233
|| |||||||||||||||||| ||||||||| | |||| |||||| ||||| |||||||
Sbjct 457 AAGCACACTAGATTTTATTGGGCATGCATTAATGCACTTGAGGAGCTAGTATATTGGCGT 516
Query 234 AAGTATTTCATTGACATAGCTGAAAGCACCGATGAGGATAAGCTACAACTGTTAGAAACT 293
|||||||||||||| ||||||| ||||||||| ||||||||| |||||||||||||| ||
Sbjct 517 AAGTATTTCATTGATATAGCTGCAAGCACCGACGAGGATAAGGTACAACTGTTAGAAGCT 576
Query 294 ATGACGGGTGTTTTACGGAACAACAAAAATGTGTCACAACAGGTAGGTTCAG 345
||||| ||||||| | |||||| || ||||| || ||||| |||||||||
Sbjct 577 ATGACTGGTGTTTCCCCCAACAACCAAGATGTGCCAAAACAGTTAGGTTCAG 628
> AT3G30520.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G42870.1);
Has 70 Blast hits to 70 proteins in 9 species: Archae - 0;
Bacteria - 8; Metazoa - 5; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:12130340-12132173
FORWARD LENGTH=1194
Length=1194
Score = 178 bits (96), Expect = 3e-44
Identities = 141/163 (87%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 114 CAAGATGATTACGATGAATTTAAAAAGGCTGAAGCGATATTCATTGCGCTAAACCTTTCC 173
||||||||||||||||||||||||||||| ||||||||||| | || ||| | ||| ||
Sbjct 721 CAAGATGATTACGATGAATTTAAAAAGGCGGAAGCGATATTTACCGCCCTAGATCTTCCC 780
Query 174 AAACACACTAGATTTTATTGGACATGCATTAGTACACTCAAGGAGCAAGTATTTTGGCGT 233
|| |||||||||||| ||||| ||||||||| | |||| ||||||| ||||||||||| |
Sbjct 781 AAGCACACTAGATTTCATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGCCT 840
Query 234 AAGTATTTCATTGACATAGCTGAAAGCACC-GATGAGGATAAG 275
|||||||||||||| ||||||| |||| || || ||||||||
Sbjct 841 AAGTATTTCATTGATATAGCTGCAAGC-CCTGACAAGGATAAG 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17392641154
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5