BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942373
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27290.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1720 0.0
> AT5G27290.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:9618392-9620533
REVERSE LENGTH=1284
Length=1284
Score = 1720 bits (931), Expect = 0.0
Identities = 1025/1070 (96%), Gaps = 7/1070 (1%)
Strand=Plus/Plus
Query 1 ACAAAATCCTTCATTGCTGAATGGTTATGTTGTTACATAGTGTGGGACTACTTCCATGTT 60
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 41 ACAAAATCCTTTATTGCTGAATGGTTATGTTGTTACATAGTGTGGGACTAATTCCATGTT 100
Query 61 CAAACCCACAAAAGTCTTTTGTCTTCCATAGTTATTACAGTTACAGATGCATAGTTTGTT 120
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 101 CAAACCAACAAAAGTCTTTTCTCTTCCATAGTTATTACCGTTACAGATGCATAGTTTGTT 160
Query 121 CATCTGAAACAGCG-TTGTCCACAAGAAGACAAG-TGTTGGAGCAAGTTGATTCTAAGTT 178
|||||||||||| | ||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 161 CATCTGAAACAG-GTTTGTCCATAAGAAGACAAGCT-TTGGAGCAAGTTGATTCTAAGTT 218
Query 179 GTCTAGTGGAGACGAGAGAGCTGCACTGTCCCTTGTCAAAGATCTCCAAGGAAAACCTGA 238
||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 219 GTCTAGTGGAGACGAAAGAGCTGCATTGTCTCTTGTCAAAGATCTCCAAGGAAAACCTGA 278
Query 239 TGGGCTTCGATGTTTTGGAGCCGCAAGGCAGGTGCCTCAGAGACTCTACACGTTGGAGGA 298
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 279 TGGCCTTCGATGTTTTGGCGCTGCAAGGCAGGTGCCTCAGAGACTCTACACGTTGGAGGA 338
Query 299 ACTAAAACTGAATGGTATTAACGCAGCTTCACTTCTCTCACCAACAGATGCAACGCTTGG 358
||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 339 ACTGAAACTGAATGGTATTAACGCAGCTTCACTTCTCTCGCCAACAGATACAACGCTTGG 398
Query 359 CTCCATCGAAAGAAACCTTCAGATCGCCGGTGTCTCAGGGGGAATAGTTGCTTGGAAAGC 418
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 399 CTCCATCGAAAGAAACCTTCAGATCGCAGCTGTCTCAGGGGGAATAGTTGCTTGGAAAGC 458
Query 419 CTTTGACTTGAGTTCTCAACAGCTTTTGTTTCTTTCTCTTGGGTTTATGTTCCTGTGGAC 478
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 459 CTTTGACTTGAGTTCTCAACAGCTTTTCTTTCTTACTCTTGGGTTTATGTTCCTGTGGAC 518
Query 479 TTTGGATTTGGTCTCATTTAATGGCGGAATTGGGAGTTTGGTTCTTGATACAATTGGTCA 538
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 519 TTTGGATTTGGTCTCTTTTAATGGCGGAATTGGGAGTTTGGTTCTTGATACAACTGGTCA 578
Query 539 TACGTTTAGCCAACGATACCATAACAGAGTTGTTCAACACGAAGCAGGTCATTTCTTGGT 598
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 579 TACGTTTAGCCAACGATACCATAACAGAGTTGTTCAGCACGAAGCGGGTCATTTCTTGGT 638
Query 599 GGCCTACTTGGTCGGGATTCTACCACGCGGATACACGCTCTCAAGCCTTGAAGCTTTACA 658
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 639 GGCCTACTTAGTCGGGATTCTACCACGCGGATACACGCTCTCTAGCCTTGAAGCTTTACA 698
Query 659 GAAAGAAGGATCTCTCAACATTCAAGCTGGTTCAGCCTTTGTAGACTATGAATTCCTTGA 718
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 699 GAAAGAAGGATCTCTCAACATTCAAGCTGGCTCAGCTTTTGTAGACTATGAATTCCTTGA 758
Query 719 AGAAGTTAATTCTGGAAAAGTCTCCGCAACCATGCTGAACAGATTCTCATGCATTGCTCT 778
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 759 AGAAGTTAATTCTGGAAAAGTCTCCGCTACGATGCTGAACAGATTCTCATGCATTGCTCT 818
Query 779 TGCTGGTGTAGCAACAGAATATCTCTTGTATGGTTATGCTGAAGGCGGCCTTGACGATAT 838
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 819 GGCTGGTGTAGCAACAGAATATCTCCTGTATGGTTATGCTGAAGGAGGCCTTGACGATAT 878
Query 839 CAGCAAGTTGGATGGTTTGGTGAAGAGTTTGGGGTTCACACAGAAGAAAGCGGACTCGCA 898
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 CAGCAAGTTAGATGGTTTGGTGAAGAGTTTGGGGTTCACACAGAAGAAAGCGGACTCGCA 938
Query 899 GGTGAGGTGGTCAGTCCTTAACACCATACTGCTATTACGTCGCCATGAGATAGCTCGATC 958
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 939 GGTGAGGTGGTCAGTCCTTAACACCATACTGCTACTACGTCGCCATGAGATAGCTCGATC 998
Query 959 CAAGCTCGCGCAGGCTATGTCCAAAGGAGAATCTGTCGGATCTTGTATCGAAGTCATCGA 1018
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 999 GAAGCTCGCGCAGGCTATGTCCAAAGGAGAATCTGTCGGATCTTGTATCCAAATCATCGA 1058
Query 1019 AGATTCTATCGATCCTTCTGATATCTAGAAATACATTGTCTTCTCTTCTA 1068
|||||||||||||||||||||||||||||||||||| | || ||| ||||
Sbjct 1059 AGATTCTATCGATCCTTCTGATATCTAGAAATACAT-G-CT-CTCATCTA 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52409368980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5