BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942378

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05230.1 | Symbols:  | RING/U-box superfamily protein | chr5...   226    1e-58


> AT5G05230.1 | Symbols:  | RING/U-box superfamily protein | chr5:1551388-1553805 
FORWARD LENGTH=1559
Length=1559

 Score =  226 bits (122),  Expect = 1e-58
 Identities = 134/140 (96%), Gaps = 0/140 (0%)
 Strand=Plus/Plus

Query  81   AATTTCTACTCGGAGGAACCCATTATCGGAAACCCTAACGACAGTGGTGGATCCGACGGC  140
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410  AATTTCTACTCGGAGAAACCCATTATCGGAAACCCTAACGACAGTGGTGGATCCGACGGC  469

Query  141  GAAGATAACGTTGACGTGGAAGAAGAAGACGAGGATGATGACATAGACGGAAATGAATGT  200
            || ||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct  470  GAGGATGACGTTGACGTGGAAGAAGAAGACGAGGATGATGACTTAGACGGAAACGAAGGT  529

Query  201  GACATCGGCATGAACAAAGA  220
            ||||||||||||||||||||
Sbjct  530  GACATCGGCATGAACAAAGA  549



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20559509341


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5