BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942381
Length=3027
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27230.1 | Symbols: | Frigida-like protein | chr5:9584092-9... 3618 0.0
> AT5G27230.1 | Symbols: | Frigida-like protein | chr5:9584092-9588049
FORWARD LENGTH=3221
Length=3221
Score = 3618 bits (1959), Expect = 0.0
Identities = 2438/2667 (91%), Gaps = 41/2667 (2%)
Strand=Plus/Plus
Query 373 GAGAAGAAGGAGAAGGAGCTTTGTTTGATTGACGAGTCGATGAGAGCGAAACAGAGCGAG 432
|||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 386 GAGAAGAAAGAGAAGGAGCTTTGTTTGATTGATGAGTCGATGAAAGCGAAACAGAGCGAG 445
Query 433 TTCGAGAAGAAGGAGAAGGAGTTTGATTTGGAACAGAAGGCAGAGTTTGAGAAGACGAAA 492
|| ||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 446 TTTGAGAAGAAGGAGAAGGATTTTGATTTGGAACAGAAGGCAGAGGTTGAGAAGAGGAAA 505
Query 493 GGAGAAGTTGAACAATTGGAGAAGTTTACGACGAGGATGGAATCGGTGGAGAGGTTTTCT 552
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 506 AGAGAAGTTGAACAGTTGGAGAAGTTTACGACGAGGATGGAATCGGTGGAGAGGGTTTCT 565
Query 553 GATGAGAAGTTGATGGAACTTGATGTCAGAGCAAAAGAGCTTGAAAAGATGGTGAAAGAA 612
|||||||||||||||||||||| | | ||||||| |||||||||| || | || |||||
Sbjct 566 GATGAGAAGTTGATGGAACTTGGTTTGAGAGCAACAGAGCTTGAATTGAAGATGGAAGAA 625
Query 613 GTAGAGAAGCAAAGAGAAGGGATTGTCGCCGGAGGTATGTTGAGAGATGAATTTGAGCCA 672
||||||||||| |||||| |||||||||| |||| || |||||||| ||| |||||||||
Sbjct 626 GTAGAGAAGCATAGAGAACGGATTGTCGCTGGAGATAAGTTGAGAGGTGAGTTTGAGCCA 685
Query 673 TTGGTTTCATTGTTGGCTAAGAACATGGGCTCAAGTGTGACAATGCCTGTAAAGTGTTCA 732
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 686 TTGGTTTCGTTGTTGGCTAAGAACATGGGCTTAAGTGTGACAATGCCTGTAAAGTGTTC- 744
Query 733 G-CTTTATACCTGAAAGAGAATGCAAAAGATTTTGTAGATGATTTGGTTAAGAAAAACAC 791
| ||||||||||||| |||||||| ||| | || || ||||||||||||||||
Sbjct 745 GACTTTATACCTGAACGAGAATGC---AGA-----T-GA-GA--TGGTTAAGAAAAACAC 792
Query 792 AGCTTTGGCGAGAATGGTTCCGTATTTGGATCCGGCAAAGGTTATTTTGGATGCTGTAGA 851
||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 793 AGCCTTGGCGAGAATGGTTCCGTATTTGGATCCTGCAAAGGTGGTTTTGGATGCTATAGA 852
Query 852 AGGGTCTTTTAAGGAATACTGGAATAAAGGTTTAGGAGAAGCTGATGATAGAGTAGTTAA 911
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 853 AGGGTCTTTTAAGGAATACTGGAAGAAAGATTTAGGAGAAGCTGATGATAGAGTAGTTAA 912
Query 912 TAGTTGCATTGTTCTGTTAGAGAATCTGTTACAGATGAATCGGAGAATCACACCGGAGGT 971
|||||| ||||||||||||||||||||| || ||||||||| || |||||||||| ||||
Sbjct 913 TAGTTGGATTGTTCTGTTAGAGAATCTGATAAAGATGAATCTGAAAATCACACCGCAGGT 972
Query 972 GAAACAGGAAGCGACTCAACTTGGGATTGATTGGTTAGGCAAGGAAAAAGCCAATCTGAA 1031
||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 973 GAAACAGGAAGCGACTCCACTTGGGATTGCTTGGTTAGGCAAGGCTAAAGCCAATATGAA 1032
Query 1032 TAATGA---CCCGCGGGTTTTAGGTTGCT-TGTTGTTTCTGGCTGCTTACGGTTT-GGCT 1086
||||| ||||| |||||| ||||| | |||||||||||||||||||||||| |||
Sbjct 1033 GAATGACCCCCCGCAGGTTTTTGGTTG-TGCGTTGTTTCTGGCTGCTTACGGTTTGGGC- 1090
Query 1087 TCTGTGACTACT-AGTGAGGTGCTCTTAACCCTTTTAGAGCGCTTTCTTTTGTATGATCA 1145
||| |||||||| | || |||||||||||||||| ||||||| || ||||||||||||||
Sbjct 1091 TCTCTGACTACTCA-TGGGGTGCTCTTAACCCTTGTAGAGCGGTTCCTTTTGTATGATCA 1149
Query 1146 TGCCCCGAAACTGTTTCGGCTTCTGGGGTTAGAAGATAAAGTTTTTGGTGCGGTTGAAAC 1205
|||||| ||||||||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 1150 TGCCCCAAAACTGTTTCGGCTTCTGGGGTTAGAAGAGAAGGTTTCTGGTGCGGTTGAAAC 1209
Query 1206 GCTAAAGAAAAGGGATGAGTATCTCGCAACACTGAACTTTATCTGTGAATTCCGGTTATA 1265
||||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1210 GCTAAAGAAAAAGGAAGAGTATCTTGCAACACTGAAATTTATCTGTGAATTCCGGTTATA 1269
Query 1266 CAAGCTTTGTCCAGGA--AATCGACCAGGAGAACTTTTGCTTGAGTTC-TTGATTTCCTC 1322
|||||||||||||||| || ||||||||||||||||| |||| ||| |||| ||||||
Sbjct 1270 CAAGCTTTGTCCAGGAGGAA--GACCAGGAGAACTTTTGATTGAATTCTTTGA-TTCCTC 1326
Query 1323 AAATAAAGCTGCCCAAGTGATTGCTGGGACTGGAACTTCGGTGGAGGCACAGAAAGCAAG 1382
| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1327 AGATAAAGCTGCCCGAGTGATTGCTGGGACTGGAACTTCAATGGAGGCGCAGAAAGCAAG 1386
Query 1383 GAGGGAGAAGAGAAGAGCTGATGCAGTCATGGCCATTAAGTACATCAAAGAGGTGAAAGC 1442
||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1387 GAGGGAGAAGAAAAAAGCTGATGCAGCCATGGCCATTAAGTACATCAAAGAGGCCAAAGC 1446
Query 1443 TGAGAATATGTTTCCTGCTAAAATTCTTAAAAAGCTGATTGTACTGAAGAACGATGAATC 1502
|||| |||||||||||||||||||||||||| | || |||| ||||||||||||||||
Sbjct 1447 CGAGACTATGTTTCCTGCTAAAATTCTTAAAAGGTTGGCTGTAGTGAAGAACGATGAATC 1506
Query 1503 AGCTCAGAGAGCAACGGAACCAGTTCATAAAAGTTATGACAAAAGACAGAGTACGACCAA 1562
|||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1507 AGCTCAGAGAGCAATGGAACCAGTTCAAAAAAGTTATGAAAAAAGACAGAGTACGACCAA 1566
Query 1563 AGCGGTAGGGAAACCTGAAGCTAAATCTATTAGTCCATATGAACAGAAGCGTGAAATTAA 1622
|| ||||| |||| ||||||||||||||| || ||||||||||||||||| || ||| ||
Sbjct 1567 AGGGGTAGAGAAATCTGAAGCTAAATCTAGTATTCCATATGAACAGAAGCATGTAATCAA 1626
Query 1623 ACGTCCAAGACTAACTGAACCAACAGCTCCTTCTCTGAATTTAACAGTGAAGCAGCCCGA 1682
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1627 ACGTCCAAGATTAACTGAACCAACAGCTCCTTCTCAGAATTTAACAGTGAAGCAGCCCGA 1686
Query 1683 GGGTGTGTCCGCTCCTTCTGGTAAGCAGGTTGAAGAATCTGGAGTAAATCATCAGCCAGA 1742
|| ||||| || |||| |||| ||||| ||| ||||||| || | | |||||||||||||
Sbjct 1687 GGTTGTGTGCGTTCCTACTGGGAAGCAAGTTAAAGAATCCGGCGCAGATCATCAGCCAGA 1746
Query 1743 CACTATAACAACTCATCCAGCAAGTACTGAAACCGAGGC-TAACATTCTCTCTGGTTCCA 1801
||| ||| ||||||||||| || |||| |||||| | || ||||||||||||||||||||
Sbjct 1747 CACCATAGCAACTCATCCATCAGGTACCGAAACC-AAGCTTAACATTCTCTCTGGTTCCA 1805
Query 1802 TTAATGCGGACATGTTAAGGGAGCTAGTAGAAAAGAAACCTCTAAAGGAGAGTGAGGGTC 1861
|||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct 1806 TTAAGGCGGACATGTTAAGGGAGCTAGTAGAAAAGCAACCTCTGAAGGAGAGTGAGGATC 1865
Query 1862 TCTCCAATGCTCTGAAATGCACACCAGATCCAGCAAAGCTTGTTCTAGACACATCCATGG 1921
|||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1866 TCTCAAATGCTCTCAAATGCACACCAGATCCAGCAAAGCTTTTTCTAGACACATCCATGG 1925
Query 1922 CTCTATGTCCTACAAACGCCGAGGGGGGATACGAGTTCAAGCTGCTGGTTACTACAGCTT 1981
|| | |||||||||||| |||| || ||||||||||||||| ||||| ||||| |||||
Sbjct 1926 CTTTGTGTCCTACAAACACCGAAGGAGGATACGAGTTCAAGATGCTGATTACTTCAGCTA 1985
Query 1982 GCTGCTCCTTATTGTTGGATCAGCTGAAGAAGCTCCTGCCTAAAATTGGACATCCTGTGA 2041
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1986 GCTGCTCCTTATTGTTGAATCAGCTGAAGAAGCTCCTGCCTAAAATTGGACATCCTGTGA 2045
Query 2042 AAGGCGATGCGAAGAAACTTGCCATTTACTGGAAAGATAAGATTTCAAAGAGCAAAAGAG 2101
||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 2046 AAGGCGATGCGAAGAAACTTGCCGTTTACTGGAAAGATAAAATTGCAAAGAGCAAAAGAG 2105
Query 2102 ATGAATTGGAAGTCATTTGCTTTCTACAGTTTCTGGGTATCTTCGGAATTGTGTCAGAGT 2161
|| |||| |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 2106 ATCAATTAGAAGTCATCTGCTTCCTACAGTTTCTTGGTATCTTTGGAATTGTGTCAGAGT 2165
Query 2162 TCAAGGCTGATGACCTTCTTGGTCTACTGGACAATTCTTATTGGCAAACTGTATCTCCTG 2221
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2166 TCAAGGCTGATGACCTTCTTGGTCTACTGGATAATTCTTATTGGCAAACTGTGTCTCCTG 2225
Query 2222 ATCTTTGCCAGTTTCTCGGGTTGGACAAGGCCATTCCAGGTTTCATTCAAAATCTCATAA 2281
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2226 ATCTTTGCCAGTTTCTCGGGTTGGACGACGCCATTCCAGGTTTCATTCAAAATCTCATAA 2285
Query 2282 AAACTGGACATCGAATCAGGGCAATAGACTACATATACTCATTTGGTATGGTCCATAGAT 2341
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2286 AAACTGGACATCGTATCAAGGCAATAGACTACATATACTCATTTGGTATGGTCCATAGAT 2345
Query 2342 TCCAACCTGTATCCGCTATTATAAACGATTCCTTGAGGATTATAAAGGAATCTGCAGAGA 2401
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 2346 TCCAACCTGTATCCGCTATCATAAACGATTCCTTGAGGATTACAAAGGAATCTGCAGAGA 2405
Query 2402 AGTCGTATAGAGAAGCCAATAACGAATCTGCAAAGCAGGTTGCAGCCATAGACAGACAAG 2461
||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |
Sbjct 2406 AGTCGTATAGAGAAGCCAAGAACGAATCTACAACGCAGGTTGCAGCCATAGACAGACAGG 2465
Query 2462 TTAGAGCACTTAGAGCCGCCATTAAATGCATATCGTGTCACAAACTTGAATCAGAGTTCC 2521
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2466 TTAGAGCACTAAGAGCCGCCATTAAATGCATATCGTGTCATAAACTCGAATCAGAGTTCC 2525
Query 2522 AACTCGGAGACCTCGAAGAACAAATCAAGTCGCTTTTGAAGCTTAGAAGAAACACAGT-T 2580
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 2526 AACTCGGAGACCTTGAAGAACAAATCAAGTCGCTTTTGAAGCTCAGAAGAAACACT-TCT 2584
Query 2581 AGTGGATCTGAATCCGGATCCGCATCGTCCAAACCTGATTCGACAATCAAACAATCTCAG 2640
| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2585 AATGGATCTGGATCCGGATCCGCATCGTCCAAACCCGATTCGACAATCAAACAATCTCAG 2644
Query 2641 ACGGCAAAACCACCAACTGTAGTAGAGGTTGCTTCTGTCACTAGCAACATACCTTTGGAA 2700
|||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct 2645 ACGGCAAAACCACCAACTGTAGCAGAGGTTGCTCCTGTTACTAGCAACATACCTTTGGAA 2704
Query 2701 CCTTCAACAGAAGCTGCATCCTCCTCTGTGAGCAAACCGTTTTCAACGAAGAAGAATAAG 2760
|||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 2705 CCTTCAACAGAAGCTGCATCCTCCTCTGCGAGCAAACCGTTTTCAA--A-GAAGAATAAG 2761
Query 2761 AGAGGGAAAAAACGCAGCCTGTCAGGAAACAATCAGAGCTCAGGACATGTTGCGTCGCAC 2820
|||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||
Sbjct 2762 AGAGGGAAAAAACGCAGCATGTCAGGAAACAATCAGAGCTCAGGACACATTGCTTCGCAC 2821
Query 2821 ACGAGCAATCACTTTCCCAACCATGACTATTCCTTGAATCAAAGACAAACTTGGCCGGTC 2880
|| |||||||||| ||||| ||||||||||||| |||||||||||| ||| |||||||||
Sbjct 2822 ACAAGCAATCACTATCCCAGCCATGACTATTCCCTGAATCAAAGACTAACGTGGCCGGTC 2881
Query 2881 GACAACTACGACAGAGGTTTCACCGGATTTC--A-CGCAGACTACAATTATAACCAGTGG 2937
||||||||||||||||||||||||||||||| | | | ||||||||| ||||||| |||
Sbjct 2882 GACAACTACGACAGAGGTTTCACCGGATTTCCTAACCCCGACTACAATAATAACCAATGG 2941
Query 2938 AGACAACCAGAGGGATCC-CAATTTTACCAACATTATCAACCTTTAAATCCTCACTACAG 2996
|||||||||||||| || ||||||||||| | ||||||||| || |||||| ||||||
Sbjct 2942 GGACAACCAGAGGGA-CCTCAATTTTACCATCTTTATCAACCGCTAGATCCTCGCTACAG 3000
Query 2997 GAACTTCTAGCCGCTCCTTTACTTTTA 3023
||||| ||||||||| ||||||| |||
Sbjct 3001 GAACTACTAGCCGCTACTTTACTATTA 3027
Score = 505 bits (273), Expect = 1e-141
Identities = 323/345 (94%), Gaps = 11/345 (3%)
Strand=Plus/Plus
Query 2 TTATTAGGGTTTTATTGTTAATGGGTAGCTTGATGGAGAAGGTAACGAGTGGCTTAGAGC 61
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 132 TTATTAGGGTTTTATTGTTAACGAGTAGCTTGATGGAGAAGGTAACGAGTGGCTTAGAGC 191
Query 62 TTGTTGATTTAAGCAAGCGTAACTTCCGCAAAACCCTAGAATCTCTCCAAGAAGGTGCTC 121
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 TTGTTGATATAAGCAAGCGTAACTTCCGCAAAACCCTAGAATCTCTCCAAGAAGGTGCTC 251
Query 122 ATTCGCTTCTTCTACTTACAATTCAATGGAAAGAGATCGAATCGTATTTCGATTCCACCA 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 252 ATTCGCTTCTTCTACTTACAATTCAATGGAAAGAGATCGAATCGTATTTCGATTCCACGA 311
Query 182 GAAACGTCCTCGAGGAACGAGCCAAGGAG-T-------T-GGAGGAATCGATGATGGTTA 232
||| ||||||||||||||||||||||||| | | |||||||||||| | |||||
Sbjct 312 GAAGCGTCCTCGAGGAACGAGCCAAGGAGCTAGAAGCGTTGGAGGAATCGATAAAGGTTA 371
Query 233 AAGCTTTGGAATTGGAGAAGAAGGAGAAGGAGCTTTGTTTGATTGATGAGTCGATGAAAG 292
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 372 AAGCTTTGGAATTGGAGAAGAAAGAGAAGGAGCTTTGTTTGATTGATGAGTCGATGAAAG 431
Query 293 CGAAACAGAGCGAGCTCGAGAAGAAGGAGAAGGAGCTTTG-TTTG 336
|||||||||||||| | ||||||||||||||||| |||| ||||
Sbjct 432 CGAAACAGAGCGAGTTTGAGAAGAAGGAGAAGGAT-TTTGATTTG 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150500829000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5