BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942385
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1192 0.0
> AT1G24310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to
2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa
- 1043; Fungi - 654; Plants - 388; Viruses - 11; Other
Eukaryotes - 769 (source: NCBI BLink). | chr1:8624061-8626405
FORWARD LENGTH=1491
Length=1491
Score = 1192 bits (645), Expect = 0.0
Identities = 743/788 (94%), Gaps = 15/788 (2%)
Strand=Plus/Plus
Query 1 TCTAACCTCTCCTTTTCCCAATGTTCGGCACTCCGTCATCCTCGCCGTCATTCGGCACTC 60
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 112 TCTAACCTCTCCTTTTCCCAATGTTCGGCACTCCGTCTTCATCGCCGTCATTCGGCACTC 171
Query 61 CGTCGTCCACACCCGCCTTTGGTACGTCTTCACCGGCGTTCGGTACACCATCAGCCACGC 120
|||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||| ||||
Sbjct 172 CGTCATCCACACCCGCCTTTGGCACATCTTCTCCGGCGTTCGGTACACCGTCAGCTACGC 231
Query 121 CTGCGTTCGGTACGCCGTCGGTTCCTTCCTTCTCCTCCGGCGGATTTGGCTCCTCACTCT 180
|||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||
Sbjct 232 CTGCGTTCGGTACGCCATCGAATCCTTCCTTCTCCTCCGGCGGATTTGGCTCTTCACTCT 291
Query 181 TCTCGACTCCCTTCTCATCGCAACAGCCACAG------CAACAACAGC-A-A-CAGCAGC 231
||||| ||||||||||||| |||||||||||| |||||||| | | | |||||||
Sbjct 292 TCTCGTCTCCCTTCTCATCTCAACAGCCACAGCAACAACAACAACAACAACAGCAGCAGC 351
Query 232 AGCCGAGTTCACTGTTTCAGCAACAGCCATCTTCTAGTTTTGGTTTTCAGTCACCATTCA 291
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 352 AGCCGAGTTCACTGTTTCAGCAACAGCCATCTTCTAATTTTGGTTTTCAGTCACCATTCA 411
Query 292 ACAACACCGCT------CAGCAGCAAACGCCGTTCCCAAATGCTCAATTGACTACTCAGA 345
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 412 ACAACACCGCTCAGCAGCAGCAGCAAACGCCTTTCCCAAATGCTCAATTGACTACTCAGA 471
Query 346 TGGCTCCCGTTGCTCCAATTCCTTACTCTCTCGCCGATCGTGACGTCCAGGCCATCATTG 405
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 472 TGGCTCCCGTTGCTCCAATTCCTTACTCTCTCGCCGATCGTGATGTCCAGGCTATCATTG 531
Query 406 AAGCTTATAAGGAAGATCCGACGAATCCCAAGTATGCTTTTCAGCATCTTTTGTTTAGTG 465
||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 532 AAGCTTATAAGGAAGATCCAACGAATCCCAAGTATGCTTTTCAGCATCTTTTATTCAGTG 591
Query 466 TGACTGAACCACAGTACCGGGTGAAGCCTGCAGCTGTATCAGATATAATGTGGGCAGAGG 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TGACTGAACCACAGTACCGGGTGAAGCCTGCAGCTGTATCAGATATAATGTGGGCAGAGG 651
Query 526 CTATGAGCAAACTTGAAGGCATGGATTCAACAGAAAGAGAGCGCCTGTGGCCTCAGCTTG 585
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 652 CCATGAGCAAACTTGAAGGTATGGATTCAACAGAAAGAGAGCGCCTTTGGCCTCAGCTTG 711
Query 586 TGCAAGGTTTTAAAGATCTTTCTCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGCCTCAG 645
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 712 TGCAAGGTTTCAAAGATCTCTCTCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGTCTCAG 771
Query 646 ATAGGGATAGAATAAAAACGACTCAGAGCAATGTTAAAATGCTCCAGAGACATTTGCAAG 705
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 772 ATAGGGATAGAATAAAAACGACTCAGAGCAATGTTAAAATGCTTCAGAGACATTTGCAAG 831
Query 706 CATCAACCTTTCCATCTATTGAAAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCA 765
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CATCAACCTTCCCATCTATTGAAAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCA 891
Query 766 TGTTGAGG 773
||||||||
Sbjct 892 TGTTGAGG 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40538956629
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5