BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942396
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27150.1 | Symbols: NHX1, ATNHX, AT-NHX1, ATNHX1 | Na+/H+ ex... 2872 0.0
AT3G05030.1 | Symbols: NHX2, ATNHX2 | sodium hydrogen exchanger... 1524 0.0
> AT5G27150.1 | Symbols: NHX1, ATNHX, AT-NHX1, ATNHX1 | Na+/H+
exchanger 1 | chr5:9553438-9557513 FORWARD LENGTH=2334
Length=2334
Score = 2872 bits (1555), Expect = 0.0
Identities = 1725/1807 (95%), Gaps = 12/1807 (1%)
Strand=Plus/Plus
Query 41 GATTCTTTAGTGTCGAAACTGCCTTCGTTATCGACATCTGATCACGCTTCTGTTGTTGCG 100
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 477 GATTCTCTAGTGTCGAAACTGCCTTCGTTATCGACATCTGATCACGCTTCTGTGGTTGCG 536
Query 101 TTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTTCTTGGTCATCTTTTGGAGGAG 160
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 537 TTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTTCTTGGTCATCTTTTGGAAGAG 596
Query 161 AATCGATGGATGAACGAATCCATCACCGCCTTATTGATTGGGCTAGGCACTGGTGTTGCC 220
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 597 AATAGATGGATGAACGAATCCATCACCGCCTTGTTGATTGGGCTAGGCACTGGTGTTACC 656
Query 221 ATTTTGTTGATTAGTAAAGGAAAAAGCTCACATCTTCTCGTCTTTAGTGAAGATCTTTTC 280
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 657 ATTTTGTTGATTAGTAAAGGAAAAAGCTCGCATCTTCTCGTCTTTAGTGAAGATCTTTTC 716
Query 281 TTCATATATCTTTTGCCACCCATTATATTCAATGCAGGGTTTCAAGTTAAAAAGAAGCAG 340
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 717 TTCATATATCTTTTGCCACCCATTATATTCAATGCAGGGTTTCAAGTAAAAAAGAAGCAG 776
Query 341 TTTTTCCGCAATTTCGTGACTATTATGCTTTTTGGTGCTGTTGGGACTATTGTTTCTTGC 400
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 777 TTTTTCCGCAATTTCGTGACTATTATGCTTTTTGGTGCTGTTGGGACTATTATTTCTTGC 836
Query 401 ACAATCATATCTCTAGGTGTAACACAGTTCTTTAAGAAATTGGACATTGGGACCTTTGAC 460
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 837 ACAATCATATCTCTAGGTGTAACACAGTTCTTTAAGAAGTTGGACATTGGAACCTTTGAC 896
Query 461 TTGGGTGATTATCTTGCTATCGGTGCAATATTTGCCGCAACAGATTCTGTGTGTACACTG 520
|||||||||||||||||||| ||||| |||||||| ||||||||||| || |||||||||
Sbjct 897 TTGGGTGATTATCTTGCTATTGGTGCCATATTTGCTGCAACAGATTCAGTATGTACACTG 956
Query 521 CAGGTTCTGAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTATTCGGAGAGGGTGTT 580
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CAGGTTCTGAATCAAGACGAGACACCTTTGCTTTACAGTCTTGTATTCGGAGAGGGTGTT 1016
Query 581 GTGAATGATGCCACATCAGTTGTTGTCTTCAATGCGATTCAGAGCTTTGACCTCACTCAC 640
||||||||||| || |||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1017 GTGAATGATGCAACGTCAGTTGTGGTCTTCAACGCGATTCAGAGCTTTGATCTCACTCAC 1076
Query 641 CTAAACCATGAAGCTGCTTTTCATCTTCTTGGAAACTTCTTGTATTTGTTTCTCCTAAGT 700
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CTAAACCACGAAGCTGCTTTTCATCTTCTTGGAAACTTCTTGTATTTGTTTCTCCTAAGT 1136
Query 701 ACCTTGCTTGGTGCTGCAACCGGTTTGATAAGTGCGTATGTCATCAAGAAGTTATATTTT 760
|||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||
Sbjct 1137 ACCTTGCTTGGTGCTGCAACCGGTCTGATAAGTGCGTATGTTATCAAGAAGCTATACTTT 1196
Query 761 GGAAGGCACTCAACAGACCGAGAAGTTGCCCTTATGATGCTTATGGCATATCTTTCTTAT 820
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1197 GGAAGGCACTCAACTGACCGAGAGGTTGCCCTTATGATGCTTATGGCGTATCTTTCTTAT 1256
Query 821 ATGCTTGCTGAGCTTTTCGACTTGAGTGGTATTCTCACTGTGTTTTTCTGTGGTATTGTG 880
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1257 ATGCTTGCTGAGCTTTTCGACTTGAGCGGTATCCTCACTGTGTTTTTCTGTGGTATTGTG 1316
Query 881 ATGTCCCATTACACATGGCACAACGTAACGGAGAGCTCAAGAATTACTACAAAGCATACC 940
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 1317 ATGTCCCATTACACATGGCACAATGTAACGGAGAGCTCAAGAATAACAACAAAGCATACC 1376
Query 941 TTTGCAACATTGTCGTTTCTTGCGGAGACATTTATTTTCTTGTATGTTGGAATGGATGCC 1000
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TTTGCAACTTTGTCATTTCTTGCGGAGACATTTATTTTCTTGTATGTTGGAATGGATGCC 1436
Query 1001 TTGGACATTGACAAGTGGAGATCCGTGAGTGACACACCGGGAACATCGATCGCAGTGAGC 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TTGGACATTGACAAGTGGAGATCCGTGAGTGACACACCGGGAACATCGATCGCAGTGAGC 1496
Query 1061 TCAATCCTAATGGGTCTGGTCATGCTTGGAAGAGCAGCATTTGTCTTTCCGTTATCGTTT 1120
|||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 1497 TCAATCCTAATGGGTCTGGTCATGGTTGGAAGAGCAGCGTTCGTCTTTCCGTTATCGTTT 1556
Query 1121 CTATCTAACCTAGCCAAGAAGAACCAAAGCGAGAAAATCAACTTTAACATGCAGGTTGTG 1180
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1557 CTATCTAACTTAGCCAAGAAGAATCAAAGCGAGAAAATCAACTTTAACATGCAGGTTGTG 1616
Query 1181 ATTTGGTGGTCTGGTCTTATGAGAGGTGCTGTATCTATGGCTCTTGCATACAATAAGTTT 1240
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1617 ATTTGGTGGTCTGGTCTCATGAGAGGTGCTGTATCTATGGCTCTTGCATACAACAAGTTT 1676
Query 1241 ACAAGGGCCGGGCAAACAGATGTACGAGGGAATGCAATCATGATCACCAGTACGATAACC 1300
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1677 ACAAGGGCCGGGCACACAGATGTACGCGGGAATGCAATCATGATCACGAGTACGATAACT 1736
Query 1301 GTCTGTCTTTTTAGCACAGTGGTGTTTGGTATGCTGACCAAACCGCTCATAAGCTACCTA 1360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1737 GTCTGTCTTTTTAGCACAGTGGTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTA 1796
Query 1361 TTGCCGCACCAGAACGCCACCACGAGCATGTTATCTGATGACAACACCCCAAAATCCATC 1420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 TTACCGCACCAGAACGCCACCACGAGCATGTTATCTGATGACAACACCCCAAAATCCATA 1856
Query 1421 CATATCCCTTTGCTAGACCAAGACTCATTCATTGAGCCTTCAGGGAACCACAATGTGCCT 1480
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1857 CATATCCCTTTGTTGGACCAAGACTCGTTCATTGAGCCTTCAGGGAACCACAATGTGCCT 1916
Query 1481 CGGCCTGATAGTATACGTGGCTTCTTGACACGGCCCACTCGAACCGTGCATTACTACTGG 1540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 CGGCCTGACAGTATACGTGGCTTCTTGACACGGCCCACTCGAACCGTGCATTACTACTGG 1976
Query 1541 AGACAATTTGATGACTCCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTTGT-CCCTTT 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1977 AGACAATTTGATGACTCCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTTGTACCCTTT 2036
Query 1600 CGTCCCTGGTTCTCCAACTGAGAGAAACCCTCCTGATCTCAGTAAGGCCTGAGGAAAATG 1659
|| || |||||||||||||||||||||||||||||||| |||||||| ||||| || |
Sbjct 2037 -GTTCCAGGTTCTCCAACTGAGAGAAACCCTCCTGATCTTAGTAAGGCTTGAGGGTAACG 2095
Query 1660 CGGAA-ATAAAGCTTTAATTTTT---GGTAGAAAAGGGTGATTCAAATTATGCTTTTGTG 1715
|||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 2096 TGGAAGA-AAAGCTTTGATTTTTTTTGGTAGAAAAGGGTGATTCAAATTATGCTTTTGTG 2154
Query 1716 TAAATTATCCATTTGTAATATTGTTTGTGAGGACAGAAATTTGTCCCAACGTTTTGAGAG 1775
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2155 TAAATTATCCATTTGTAATATTGTTTGTGAGGACAGAAATCTGTCCTAACGTTTTGAGAG 2214
Query 1776 CAGAAAACAAA-CATGGAAACTTTGAAGGGTTTGATTGACGTATGTA-T-AT-T-CATAT 1830
|||||| |||| ||||| |||||||||| |||||||||| ||||||| | || | |||||
Sbjct 2215 CAGAAAGCAAAACATGGCAACTTTGAAGTGTTTGATTGATGTATGTAATTATATTCATAT 2274
Query 1831 TTGTTTT 1837
|||||||
Sbjct 2275 TTGTTTT 2281
> AT3G05030.1 | Symbols: NHX2, ATNHX2 | sodium hydrogen exchanger
2 | chr3:1393298-1397358 REVERSE LENGTH=2146
Length=2146
Score = 1524 bits (825), Expect = 0.0
Identities = 1369/1624 (84%), Gaps = 67/1624 (4%)
Strand=Plus/Plus
Query 77 TCTGATCACGCTTCTGTTGTTGC-GTTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTAT 135
||||||||||| ||||| ||| | || |||||||||||||| ||||| |||||||||||
Sbjct 396 TCTGATCACGCATCTGTCGTTTCACTT-AATCTCTTTGTTGCCCTTCTATGTGCTTGTAT 454
Query 136 TGTTC-TTGGTCATCTTTTGGAGGAGAATCGATGGATGAACGAATCCATCACCGCCTTAT 194
| || |||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 455 CG-TCATTGGCCATCTTTTGGAGGAGAATCGATGGATGAACGAATCCATCACTGCTTTAT 513
Query 195 TGATTGGGCTAGGCACTGGTGTTGCCATTTTGTTGATTAGTAAAGG-AAAAAGCTCACAT 253
|||||||||| ||||||||||| | ||| ||||||||||||| ||| ||||| |||||||
Sbjct 514 TGATTGGGCTTGGCACTGGTGTCGTCATATTGTTGATTAGTAGAGGGAAAAA-CTCACAT 572
Query 254 CTTCTCG-TCTTTAGTGAAGATCTTTTCTTCATATATCTTTTGCCACCCATTATATTCAA 312
|| || | |||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 573 CT-CTTGGTCTTTAGTGAAGATCTCTTCTTTATATATCTTTTGCCACCCATAATATTCAA 631
Query 313 TGCAGGGTTTCAAGTTAAAAAGAAGCAGTTTTTCCGCAATTTCGTGACTATTATG-CTTT 371
||||||||||||||| |||||||||||||||||||| ||||| || ||||||||| ||||
Sbjct 632 TGCAGGGTTTCAAGTAAAAAAGAAGCAGTTTTTCCGAAATTTTGTAACTATTATGGCTTT 691
Query 372 TTGGTGCTGTTGGGACTATTGTTTCTTGCACAATCATATCTCTAGGTGTAACACAGTTCT 431
| || || ||||||| | ||||||||||| || ||||||||||||| || |||||||
Sbjct 692 T-GGCGCCATTGGGACCGTAGTTTCTTGCACCATAATATCTCTAGGTGCAATTCAGTTCT 750
Query 432 TTAAGAAATTGGACATTGGGACCTTTGACTTGGGTGATTATCTTGCTATCGGTGCAATAT 491
|||||||||| ||||||||||||||||||||||| |||| |||||| ||||| || ||||
Sbjct 751 TTAAGAAATTAGACATTGGGACCTTTGACTTGGGCGATTTTCTTGCAATCGGCGCCATAT 810
Query 492 TTGCCGCAACAGATTCTGTGTGTACACTGCAGGTTCTGAATCAAGATGAGACACCTTTGC 551
|||| ||||| || ||||| || ||||| |||||||| ||||||||||||||||||||||
Sbjct 811 TTGCTGCAACCGACTCTGTATGCACACTACAGGTTCTCAATCAAGATGAGACACCTTTGC 870
Query 552 TTTACAGTCTTGTATTCGGAGAGGGTGTTGTGAATGATGCCACATCAGTTGTTG-TCTTC 610
|||||||||||||||| |||||||| |||||||||||||||||||| ||||| | |||||
Sbjct 871 TTTACAGTCTTGTATTTGGAGAGGGCGTTGTGAATGATGCCACATCTGTTGT-GCTCTTC 929
Query 611 AATGCGATTCAGAGCTTTGACCTCACTCACCTAAACCATGAAGCTGCTTTTCA-TCTTCT 669
||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| | ||||
Sbjct 930 AATGCTATTCAGAGTTTTGACCTCACCCACCTTAACCATGAAGCAGCTTTTCAAT-TTCT 988
Query 670 TGGAAACTTCTTGTATTTGTTTCTCCTAAGTACCTTG-CTTGGTG-CTGCAACCGGTTTG 727
||| ||||| || ||| |||||||| | || ||| | ||||||| | ||||| ||| ||
Sbjct 989 TGGGAACTTTTTTTATCTGTTTCTCTTGAGCACCG-GACTTGGTGTC-GCAACTGGTCTG 1046
Query 728 ATAAGTGCGTATGTCATCAAGAAGTTATATTTTGGAAGGCACTCAACAGACCGAGAAGTT 787
|||||||| |||||||||||||| | ||||||||||||||||| || || |||||||||
Sbjct 1047 ATAAGTGCTTATGTCATCAAGAAACTGTATTTTGGAAGGCACTCGACTGATCGAGAAGTT 1106
Query 788 GCCCTTATGATGCTTATGGCATATCTTTCTTATATGCTTGCTGAGCTTTTCGACTTGAGT 847
||||| |||||||||||||| |||||||| ||||||||||||||||| |||| |||||||
Sbjct 1107 GCCCTCATGATGCTTATGGCTTATCTTTCATATATGCTTGCTGAGCTATTCGCCTTGAGT 1166
Query 848 GGTATTCTCACTGTGTTTTTCTGTGGTATTGTGATGTCCCATTACACATGGCACAACGTA 907
||||| || ||||| ||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 1167 GGTATCCTAACTGTATTTTTCTGTGGGATTGTGATGTCCCATTACACTTGGCACAATGTC 1226
Query 908 ACGGAGAGCTCAAGAATTACTACAAAGCATACCTTTGCAACATTGTCGTTTCTTGCGGAG 967
|| |||||||||||||||||||| |||||| ||||||| || ||||||||||| || |||
Sbjct 1227 ACCGAGAGCTCAAGAATTACTACCAAGCATGCCTTTGCTACTTTGTCGTTTCTCGCTGAG 1286
Query 968 ACATTTATTTTCTTGTATGTTGGAATGGATGCCTTGGACATTGACAAGTGGAGATCCGTG 1027
|| ||||||||| | || |||||||||||||| |||||||| || || ||||||| ||||
Sbjct 1287 ACTTTTATTTTCCTCTACGTTGGAATGGATGCATTGGACATAGAGAAATGGAGATTCGTG 1346
Query 1028 AGTGACA-CACCGGGAACATC-GATCGCAGTGAGCTCAATCCTAATGGGTCTGGTCATGC 1085
||||||| | ||||| ||||| | | |||||||||||||| ||||||||||| |||||||
Sbjct 1347 AGTGACAGC-CCGGGGACATCAGTT-GCAGTGAGCTCAATTCTAATGGGTCTAGTCATGC 1404
Query 1086 TTGGAAGAGCAGCATTTGTCTTTCCG-TTATCGTTTCT-ATCTAACCTAGCCAAGAAGAA 1143
||||||||||||| ||||||||||| || || || || ||| ||| ||||||||||| |
Sbjct 1405 TTGGAAGAGCAGCTTTTGTCTTTCCTCTT-TCCTT-CTTATCAAACTTAGCCAAGAAGCA 1462
Query 1144 CCAAAGCGAGAAAATCAACTTTAA-CATGCAGGTTGTGATTTGGTGGTCTGGTCTTATGA 1202
|| ||||||||||||| | | || || ||| |||||||| |||||| ||||||| ||||
Sbjct 1463 TCAGAGCGAGAAAATCAGCATCAAGCA-GCAAGTTGTGATCTGGTGGGCTGGTCTAATGA 1521
Query 1203 GAGGTGCTGTATCTATGGCTCTTGCATACAATAAGTTTACAAGGGCCGGGCAAACAGA-T 1261
||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||| |
Sbjct 1522 GAGGTGCTGTATCTATGGCTCTTGCCTACAATAAGTTTACAAGATCAGGGCACACAGAAT 1581
Query 1262 GTACGAGGGAATGCAATCATGATCACCAGTACGATAACCGTCTGTCTTTTTAGCAC-AGT 1320
| || ||||||||||||||||| |||||||| ||||||||||||||||||||||| | |
Sbjct 1582 -TGCGCGGGAATGCAATCATGATTACCAGTACAATAACCGTCTGTCTTTTTAGCACCA-T 1639
Query 1321 GGTGTTTGGTATGCTGACCAAACCGCTCATAAGCTACCTATTGCCGCACCAGAA--CG-C 1377
||||||||||||||| |||||||| || || || |||||| |||| ||||| || || |
Sbjct 1640 GGTGTTTGGTATGCTAACCAAACCACTGATTAGATACCTAATGCCACACCAAAAAGCGAC 1699
Query 1378 CACCA---C---GAGCATGTTATCTGATGACAACACCCCAAAATCCATCCATAT-CC-CT 1429
||||| | ||| |||||||| || || | ||| || ||||| ||||| || || ||
Sbjct 1700 CACCAGTACCACGAGTATGTTATCGGACGATAGCACTCCGAAATCAATCCACATTCCGCT 1759
Query 1430 T-T-GCTAG--ACCAAGACTC-ATTCATT-GAGCCTT-CA-GGGAACCAC-A--ATGTGC 1478
| | | | | || | || ||||||| ||| || | |||| |||| | | ||||
Sbjct 1760 CCTCGATGGTGAACA-G-CTAGATTCATTTGAG--TTACCTGGGAGCCACCAGGACGTGC 1815
Query 1479 CTCGGCCTGATAGTATACGTGGCTTCTTGACACGGCCCACTCGAACCGTGCATTACTACT 1538
| || || | || | || || ||| | | || ||||| || || || || || ||||
Sbjct 1816 CACGACCAAACAGCCTTCGAGGTTTCCTCATGCGCCCCACACGGACTGTCCACTATTACT 1875
Query 1539 GGAGACAATTTGATGACT-CCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTTGT-CCC 1596
||||||| |||||||| | |||||||||| || || ||||| ||||| || || || |||
Sbjct 1876 GGAGACAGTTTGATGA-TGCCTTCATGCGTCCTGTGTTTGGTGGTCGCGGATTCGTTCCC 1934
Query 1597 TTTCGTCCCTGGTTCTCCAACTGAGAGAAACCCTCC-TGATCTCAGTAAGGCCT-GAGGA 1654
||| |||||||||||||| |||||||||| | || |||||| ||||| ||| |||||
Sbjct 1935 TTT-GTCCCTGGTTCTCCGACTGAGAGAAGCAG-CCATGATCTTAGTAAA-CCTTGAGGA 1991
Query 1655 -AAA 1657
|||
Sbjct 1992 GAAA 1995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90913186995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5