BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942400
Length=2113
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2922 0.0
> AT5G27110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:9538572-9540647 REVERSE LENGTH=2076
Length=2076
Score = 2922 bits (1582), Expect = 0.0
Identities = 1916/2080 (92%), Gaps = 11/2080 (1%)
Strand=Plus/Plus
Query 21 ATGGAATCTTCAAAGTTGTTATCTTTATTGCGAGAATGTACCAAT---ACCAAGTCTCTA 77
|||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 1 ATGGAATCTTCAAAGTTGTTGTCTTTATTGCGAGAGTGTACCAATAGCACCAAGTCTCTA 60
Query 78 AG-ACAAGCCAAGCTTGTTCACCAGAGAATACTCACGGTGGGGTTACGTAGCGACGTCGT 136
|| | || ||||||||| || ||||||||||||||| |||||||||| || ||||| ||
Sbjct 61 AGAAGAA-TCAAGCTTGTGCATCAGAGAATACTCACGTTGGGGTTACGAAGAGACGTAGT 119
Query 137 TTTATGCAAAAGTCTCATCAATGTCTACTTCGCTTGTAAAGACCATTGCTCTGCAAGACT 196
|||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 120 TTTATGCAAAAGTCTCATCAATGTCTACTTTACTTGTAAAGACCATTGCTCAGCGAGACA 179
Query 197 CGTCTTCGAAAACATCGATATACGGTCGGATGTTTACATCTGGAACTCTCTAGTGTCTGG 256
||||||||| ||| |||||||||| |||||||||||||| ||||||||| || |||||||
Sbjct 180 CGTCTTCGAGAACTTCGATATACGATCGGATGTTTACATATGGAACTCTTTAATGTCTGG 239
Query 257 TTATTCAAAGAACTCAATGTTTCATGACACTCTTAAGGTTTTCAAGAGGTTGTTGAATTG 316
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 TTATTCAAAGAACTCAATGTTTCATGACACTCTTGAGGTTTTCAAGAGGTTGTTGAATTG 299
Query 317 CCCAATTTGCGTCCCTGATTCGTTTACTTACCCGAATGTGATTAAGGCTTATGGTGCGTT 376
| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 CTCAATTTGTGTCCCTGATTCGTTTACTTTTCCGAATGTGATTAAGGCTTATGGTGCGTT 359
Query 377 AGGTAGAGAGTTTCTTGGTAGGATGATTCATACTGTTGTAGTGAAAAGTGGGCATGTTTG 436
||||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||||
Sbjct 360 GGGTAGAGAGTTTCTTGGTAGGATGATTCATACTCTTGTGGTGAAGAGTGGGTATGTTTG 419
Query 437 TGATGTTGTTGTGGCGAGTTCTTTGGTTGGTATGTATGCAAAGTTTAACTTGTTTGAGGA 496
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 TGATGTGGTTGTGGCGAGTTCTTTGGTTGGTATGTATGCAAAGTTTAACTTGTTTGAGAA 479
Query 497 TTCAGTACAAGTGTTCGATGAAATGCCTGAGAGAGATGTTGCGTCTTGGAACACGGTTAT 556
|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 480 TTCACTACAAGTGTTCGATGAAATGCCTGAGAGAGATGTAGCATCTTGGAACACGGTTAT 539
Query 557 TTCAAGCTTTTATCAACGCGGGGAGGCTGAGAAGGCTTTGGAGTTATTTGGAAGAATGGA 616
||| | ||||||||| | || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 540 TTCGTGTTTTTATCAAAGTGGAGAGGCAGAGAAGGCTTTGGAGTTGTTTGGAAGAATGGA 599
Query 617 AAGTTCTGACTTTGAACCAAATTCAGTTTCAATT-ACGGTAGCTATATCGGCGTGCTCGA 675
|||||||| ||||||||||||||||||||| || ||||| |||||||||||||| || |
Sbjct 600 AAGTTCTGGCTTTGAACCAAATTCAGTTTC-GTTGACGGTGGCTATATCGGCGTGTTCAA 658
Query 676 GGCTGTTGTATTTGGAGAGAGGGAAGGAGATCCATAGAAAATATTTGAAGAAAGGGTTTG 735
||||||||| |||||||||||||||||||| |||||||||| | |||||||||||||||
Sbjct 659 GGCTGTTGTGGTTGGAGAGAGGGAAGGAGATACATAGAAAATGTGTGAAGAAAGGGTTTG 718
Query 736 AGTTAGATGAGTATGTAAACTCTGCCCTTGTTGATATGTATGGGAAATGTGACTGCTTGG 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGTTAGATGAGTATGTAAACTCTGCCCTTGTTGATATGTATGGGAAATGTGACTGCTTGG 778
Query 796 AGATGGCTAGAGAGGTTTTTCAGAAAATGCGTAGAAAGAGTTTGATTGCTTGGAATTCTA 855
|| ||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 779 AGGTGGCTAGGGAGGTTTTTCAGAAAATGCCTAGAAAGAGTTTGGTTGCTTGGAATTCTA 838
Query 856 TGATTAGAGGTTATGTCGCTAGAGGAGATAGTAAGTCATGTGTTGAGCTTTTGAATAGAA 915
|||| | |||||||||||||| |||||| |||||||||||||||||| ||||||||||||
Sbjct 839 TGATCAAAGGTTATGTCGCTAAAGGAGACAGTAAGTCATGTGTTGAGATTTTGAATAGAA 898
Query 916 TGATTATAGAAGGAACTCGACCGAGTCAGACAACCTTGACCAGTATTTTGATGGCTTGCT 975
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 TGATCATAGAAGGAACTCGACCGAGTCAGACAACCTTGACCAGCATTTTGATGGCTTGCT 958
Query 976 CTCGCTCACGGAATCTATTACATGGAAAATTTGTTCACGGTTATGTGATTAGGAGTGTTG 1035
|||||||||||||||| |||||||||||||| | ||||||||||||||||| || ||||
Sbjct 959 CTCGCTCACGGAATCTCCTACATGGAAAATTTATACACGGTTATGTGATTAGAAGCGTTG 1018
Query 1036 TTGATGCAGATATCTATATAAACTGTTCTCT-GATTGATCTTTACTTCAAGTGTGGTGAA 1094
| |||||||||||||| | |||||||| || ||||||||| ||||||||||||||||||
Sbjct 1019 TAAATGCAGATATCTATGTGAACTGTTC-CTTGATTGATCTATACTTCAAGTGTGGTGAA 1077
Query 1095 GTTAAGTTGGCTGAAACCGTCTTTTTAAAGACACAGAAAGACGTTGTTGAGTCATGGAAT 1154
| || ||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 1078 GCAAATTTGGCTGAAACCGTCTTTTCAAAGACACAGAAGGACGTTGCTGAGTCATGGAAT 1137
Query 1155 GTTATGATCTCTGGTTATGTCAGTGTAGGTAATTGGTTTAAGGCTGTTGACGTGTATGAC 1214
|| ||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1138 GTCATGATTTCTAGTTATATCAGTGTAGGTAATTGGTTTAAGGCTGTTGAAGTGTATGAC 1197
Query 1215 CAAATGGTGAGTGTTGGAGTGCAGCCAGATATAGTAACTTTCACAAGTGTTTTATCTACT 1274
||||||||||||||||||||| ||||||| | ||||||||||||||||||||| || ||
Sbjct 1198 CAAATGGTGAGTGTTGGAGTGAAGCCAGACGTGGTAACTTTCACAAGTGTTTTACCTGCT 1257
Query 1275 TGTTCGCAACTGGCTGCGTTAGAGAAAGGTAAACAGATTCATTTGTCCATTAGCGAGAGC 1334
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1258 TGTTCGCAACTGGCTGCGTTAGAGAAAGGCAAACAGATTCATTTGTCCATTAGTGAGAGC 1317
Query 1335 AGGCTCGAAACAGACGAGTTGCTGTTGAGTGCGCTCCTTGACATGTATTCTAAATGCGGT 1394
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1318 AGGCTCGAAACAGACGAGTTGCTTTTGAGTGCGCTTCTTGACATGTATTCTAAATGCGGC 1377
Query 1395 AATGTAAAAGAGGCTTCTAGAATTTTCAACAGTATACCAAAGAAAGATGTTGTGTCATGG 1454
|||| ||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 1378 AATGAAAAAGAGGCTTTTAGGATTTTCAACAGTATACCAAAGAAGGATGTTGTATCATGG 1437
Query 1455 ACGGTAATGATCTCTGCGTATGGATCTCATGGTCAACCCAGAGAAGCGCTCTACCATTTT 1514
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1438 ACGGTAATGATCTCTGCGTATGGATCTCATGGTCAACCCAGAGAAGCACTTTACCAGTTT 1497
Query 1515 GATGAAATGCAGAAGTTTGGTGTAAAACCTGATGGGGTTACTTTTCTTGCTGTATTGTCA 1574
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1498 GATGAAATGCAGAAGTTTGGTCTAAAACCTGATGGGGTTACTCTTCTTGCTGTATTGTCA 1557
Query 1575 GCTTGTGGTCATGCTGGGTTAATTGATGAAGGTGTCAAGTATTTCAGTCAAATGAGATCC 1634
|||||||||||||||||| |||||||||| ||| |||| | ||||||||||||||||||
Sbjct 1558 GCTTGTGGTCATGCTGGGCTAATTGATGAGGGTCTCAAATTTTTCAGTCAAATGAGATCA 1617
Query 1635 AAGTATGGAATCGAGGCTAGTATTGAACAGTACTCGTGCTTGATTGACATCCTTGGCCGA 1694
||||| ||||||||| ||| ||||||||| ||||||||| |||||||||| |||||||||
Sbjct 1618 AAGTACGGAATCGAGCCTATTATTGAACATTACTCGTGCATGATTGACATTCTTGGCCGA 1677
Query 1695 GCAGGTCGGTTGCTTGAAGCTTATGGAATTCTTCAACAAAAACCAGAGACAAGAGACAAT 1754
||||||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||
Sbjct 1678 GCAGGTCGGTTGCTTGAAGCTTATGAAATTATTCAACAAACACCAGAGACAAGTGACAAT 1737
Query 1755 GCAGAGCTTCTCAGTACTCTCTTCTGTGCTTGTTGCTTGCATCGGGATCATTTGTTGGGA 1814
||||||||||||||||||||||||| ||||||||||||||| | ||| |||| ||||||
Sbjct 1738 GCAGAGCTTCTCAGTACTCTCTTCTCTGCTTGTTGCTTGCACCTGGAACATTCATTGGGA 1797
Query 1815 TATACAATCGCAAAATTACTTGTGGAGAAATATCCAGATGATGCATCAACCTACACTG-T 1873
||| |||||||| ||| ||||| ||||| ||||||||||||||||||||||||| || |
Sbjct 1798 GATAGAATCGCAAGATTGCTTGTTGAGAATTATCCAGATGATGCATCAACCTACA-TGGT 1856
Query 1874 CTTGTTCAATTTGTATGCTTCTGGCGAGTCATGGGATGCAGCAAGGCGAGTAAGATTGAA 1933
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct 1857 CTTGTTCAATTTGTATGCTTCTGGTGAGTCATGGGATGCAGCAAGACGAGTCAGATTAAA 1916
Query 1934 AATGAAAGAAGTGGGAATGAGGAAGAAACCGGGCTGCAGTTGGATTGAGATGAATGAAAA 1993
|||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1917 AATGAAAGAAATGGGATTGAGGAAGAAACCGGGCTGCAGTTGGATTGAGATGAGTGACAA 1976
Query 1994 AGTGTGCCATTTCTTTGCTGAGGATAGGTCTCATCCACAAGCTGAGAATGTTTATGAATG 2053
|||||||||||||||||||||||| ||||||||| || ||||||||| |||||||| ||
Sbjct 1977 AGTGTGCCATTTCTTTGCTGAGGACAGGTCTCATTTACGAGCTGAGAACGTTTATGAGTG 2036
Query 2054 TCTTGCTCTTTTAAGTGGTCACATGGAAGCTGGTCAATGA 2093
|||||||||||| ||||||||||||||| | |||||||||
Sbjct 2037 TCTTGCTCTTTTGAGTGGTCACATGGAATCCGGTCAATGA 2076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104768537415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5