BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942410
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27990.1 | Symbols: | Pre-rRNA-processing protein TSR2, con... 675 0.0
> AT5G27990.1 | Symbols: | Pre-rRNA-processing protein TSR2, conserved
region | chr5:10017036-10018441 FORWARD LENGTH=859
Length=859
Score = 675 bits (365), Expect = 0.0
Identities = 506/572 (88%), Gaps = 17/572 (3%)
Strand=Plus/Plus
Query 30 TTGACGGAGGAGGGTAGGGCTGTACTGAGTGAAGGAATTGGTTTGATACTCTGGCGATGG 89
||||||| ||||| ||||| | |||||| |||||||| ||||||||||| ||||| |||
Sbjct 147 TTGACGGTGGAGGCTAGGGATATACTGAAAGAAGGAATCGGTTTGATACTTTGGCGGTGG 206
Query 90 ACCGCTATGCGAGCCGCCGTCGAAAACGGTTGGGGCGGCCGAGACTCTCAAGCGAAAGCT 149
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 207 ACTGCTATGCGAGCCGCCGTCGAAAACGGTTGGGGCGGCCGAGACTCTCAAGCCAAAGCC 266
Query 150 GATGGCACCGTTTCCACTGTTTTCAAATTTTTAACCCAATCAAACGATCCAGC-AAGGGA 208
| | |||||| ||||||||||| | ||||| | ||||||||| ||||||| |||| |
Sbjct 267 AACGAAACCGTTGCCACTGTTTTCGACTTTTTCATCCAATCAAAAGATCCAGTGAAGG-A 325
Query 209 CATTGA-AACATTAGGTGACATTTTAGATAAAGGTCTTGATGAGCTTAATACTACGGCTG 267
|||||| || |||||||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 326 CATTGAGAA-ATTAGGTGACCTTCTAGATAAAGGTCTTGATGAGCTTAATACTACAGCTG 384
Query 268 AAGATGGAAGCGTCGATGAGGTGGCAAACACT-CTAATAGATTTGTATGAAGATTGCTGT 326
|||||||||| |||||||||||||| ||| | ||| |||||||||| ||||||||||||
Sbjct 385 AAGATGGAAGTGTCGATGAGGTGGCGAACT-TACTAGTAGATTTGTACGAAGATTGCTGT 443
Query 327 AACGATAACTATGAAATGCTTGAGGAACTAAGGGCAACTAGAT-CTCAGGCGAGTGCAAG 385
|||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 444 AACGGTAACTATGAAATGCTTGAGGAACTAAGGGCAACTT-ATTCTCAGACGAGTGCAAG 502
Query 386 TGTTGTTAAGGTTTCAAACGGTAACGATGAGGAAAGTGATGATGAAGATGAGGACAATGA 445
|||||| ||||||||||||||| | || ||||||||||||||||||||||| |||
Sbjct 503 TGTTGTCAAGGTTTCAAACGGTGATGACGAGGAAAGTGATGATGAAGATGA------TGA 556
Query 446 TCAAACCACAGACATGATGGTGGAGGCATCTAACCAGAAACCAGAAGTCATGCCGGTTGA 505
||||||||| |||||||||||||| || ||||||||||||| ||||| |||||| |||||
Sbjct 557 TCAAACCACTGACATGATGGTGGATGCGTCTAACCAGAAACAAGAAGCCATGCCTGTTGA 616
Query 506 TGAACCAGCTA-CCGATGATGGTTGGACGGTAATTTCATCGAGAAAAAACAAGGGAAAGA 564
|||||||| || ||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct 617 TGAACCAG-TAGCCGATGATGGTTGGACGGTTGTTTCGTCTAGAAAAAACAAGGGAAAGA 675
Query 565 GGAATTAACC-GGTTTTGATTCCCAAGGTGTT 595
|||||||||| ||||||||| |||||||||||
Sbjct 676 GGAATTAACCCGGTTTTGATCCCCAAGGTGTT 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28633463790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5