BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942410 Length=595 Score E Sequences producing significant alignments: (Bits) Value AT5G27990.1 | Symbols: | Pre-rRNA-processing protein TSR2, con... 675 0.0 > AT5G27990.1 | Symbols: | Pre-rRNA-processing protein TSR2, conserved region | chr5:10017036-10018441 FORWARD LENGTH=859 Length=859 Score = 675 bits (365), Expect = 0.0 Identities = 506/572 (88%), Gaps = 17/572 (3%) Strand=Plus/Plus Query 30 TTGACGGAGGAGGGTAGGGCTGTACTGAGTGAAGGAATTGGTTTGATACTCTGGCGATGG 89 ||||||| ||||| ||||| | |||||| |||||||| ||||||||||| ||||| ||| Sbjct 147 TTGACGGTGGAGGCTAGGGATATACTGAAAGAAGGAATCGGTTTGATACTTTGGCGGTGG 206 Query 90 ACCGCTATGCGAGCCGCCGTCGAAAACGGTTGGGGCGGCCGAGACTCTCAAGCGAAAGCT 149 || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 207 ACTGCTATGCGAGCCGCCGTCGAAAACGGTTGGGGCGGCCGAGACTCTCAAGCCAAAGCC 266 Query 150 GATGGCACCGTTTCCACTGTTTTCAAATTTTTAACCCAATCAAACGATCCAGC-AAGGGA 208 | | |||||| ||||||||||| | ||||| | ||||||||| ||||||| |||| | Sbjct 267 AACGAAACCGTTGCCACTGTTTTCGACTTTTTCATCCAATCAAAAGATCCAGTGAAGG-A 325 Query 209 CATTGA-AACATTAGGTGACATTTTAGATAAAGGTCTTGATGAGCTTAATACTACGGCTG 267 |||||| || |||||||||| || ||||||||||||||||||||||||||||||| |||| Sbjct 326 CATTGAGAA-ATTAGGTGACCTTCTAGATAAAGGTCTTGATGAGCTTAATACTACAGCTG 384 Query 268 AAGATGGAAGCGTCGATGAGGTGGCAAACACT-CTAATAGATTTGTATGAAGATTGCTGT 326 |||||||||| |||||||||||||| ||| | ||| |||||||||| |||||||||||| Sbjct 385 AAGATGGAAGTGTCGATGAGGTGGCGAACT-TACTAGTAGATTTGTACGAAGATTGCTGT 443 Query 327 AACGATAACTATGAAATGCTTGAGGAACTAAGGGCAACTAGAT-CTCAGGCGAGTGCAAG 385 |||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||| Sbjct 444 AACGGTAACTATGAAATGCTTGAGGAACTAAGGGCAACTT-ATTCTCAGACGAGTGCAAG 502 Query 386 TGTTGTTAAGGTTTCAAACGGTAACGATGAGGAAAGTGATGATGAAGATGAGGACAATGA 445 |||||| ||||||||||||||| | || ||||||||||||||||||||||| ||| Sbjct 503 TGTTGTCAAGGTTTCAAACGGTGATGACGAGGAAAGTGATGATGAAGATGA------TGA 556 Query 446 TCAAACCACAGACATGATGGTGGAGGCATCTAACCAGAAACCAGAAGTCATGCCGGTTGA 505 ||||||||| |||||||||||||| || ||||||||||||| ||||| |||||| ||||| Sbjct 557 TCAAACCACTGACATGATGGTGGATGCGTCTAACCAGAAACAAGAAGCCATGCCTGTTGA 616 Query 506 TGAACCAGCTA-CCGATGATGGTTGGACGGTAATTTCATCGAGAAAAAACAAGGGAAAGA 564 |||||||| || ||||||||||||||||||| |||| || ||||||||||||||||||| Sbjct 617 TGAACCAG-TAGCCGATGATGGTTGGACGGTTGTTTCGTCTAGAAAAAACAAGGGAAAGA 675 Query 565 GGAATTAACC-GGTTTTGATTCCCAAGGTGTT 595 |||||||||| ||||||||| ||||||||||| Sbjct 676 GGAATTAACCCGGTTTTGATCCCCAAGGTGTT 707 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28633463790 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5