BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942420

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47450.1 | Symbols: ATTIP2;3, TIP2;3, DELTA-TIP3 | tonoplast...   588    2e-167


> AT5G47450.1 | Symbols: ATTIP2;3, TIP2;3, DELTA-TIP3 | tonoplast 
intrinsic protein 2;3 | chr5:19248249-19249504 REVERSE LENGTH=1051
Length=1051

 Score =  588 bits (318),  Expect = 2e-167
 Identities = 363/385 (94%), Gaps = 2/385 (1%)
 Strand=Plus/Plus

Query  15   CAAAAAATGGTGAAGATCGAAGTTGGAAGTGTGGGTGACTCATTCAGTGTATCATCTCTA  74
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct  33   CAAAAAATGGTGAAGATCGAAGTTGGAAGTGTGGGAGACTCATTCAGTGTATCATCTCTT  92

Query  75   AAAGCTTACTTGTCTGAGTTTATCGCAACTCTTCTCTTCGTATTCGCCGGTGTTGGCTCT  134
            |||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct  93   AAAGCTTACTTGTCTGAGTTCATCGCAACTCTTCTCTTCGTATTCGCAGGCGTTGGCTCT  152

Query  135  GCTATAGCGTTTGACAAACTAACCTCTGATGGAGCCTTAGACACGGCTGGTCTTGTAGCG  194
            ||| | ||||||| |||||||||||||||||||||||| ||| | |||||||||||||| 
Sbjct  153  GCTGTTGCGTTTGCCAAACTAACCTCTGATGGAGCCTTGGACCCAGCTGGTCTTGTAGCA  212

Query  195  ATTGCGATTGCTCACGCGTTTGCTCTTTTTGTTGGAGTTTCCATTGCGGCTAATATATGC  254
            ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || | |
Sbjct  213  ATTGCAATTGCTCACGCGTTTGCTCTTTTCGTTGGAGTTTCCATTGCGGCTAACAT-TTC  271

Query  255  -GGTGGTCACCTTAACCCAGCAGTGACTCTTGGCCTTGCCATCGGCGGAAACATAACACT  313
             |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  272  TGGTGGTCACCTTAACCCAGCCGTGACTCTTGGCCTTGCCATCGGCGGAAACATAACACT  331

Query  314  CATCACAGGTTTCTTCTACTGGATTGCTCAGTGTCTTGGCTCCATCGTCGCTTGTCTTCT  373
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  332  CATCACAGGTTTCTTCTATTGGATTGCTCAGTGTCTTGGCTCCATCGTCGCTTGTCTTCT  391

Query  374  CCTCGTCTTTGTTACCAATGGAAAG  398
            ||||||||||||||| ||||| |||
Sbjct  392  CCTCGTCTTTGTTACTAATGGCAAG  416



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21765935317


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5