BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942428
Length=442
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28060.1 | Symbols: | Ribosomal protein S24e family protein... 713 0.0
AT3G04920.1 | Symbols: | Ribosomal protein S24e family protein... 510 4e-144
> AT5G28060.1 | Symbols: | Ribosomal protein S24e family protein
| chr5:10069546-10070899 REVERSE LENGTH=754
Length=754
Score = 713 bits (386), Expect = 0.0
Identities = 423/441 (96%), Gaps = 2/441 (0%)
Strand=Plus/Plus
Query 1 TCTCGG--AGTAAATCGCAGCCATGGCGGAAAAAGCTGTCACAATCAGGACCAGAAACTT 58
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 86 TCTCGGAAAGTAAATCGCAGCCATGGCGGAAAAAGCTGTCACTATCAGGACCAGAAACTT 145
Query 59 CATGACCAACAGGCTTCTCGCCAGAAAGCAATTCGTTATTGATGTTCTTCATCCTGGAAG 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 CATGACCAACAGGCTTCTCGCCAGAAAGCAATTCGTTATTGATGTTCTTCATCCTGGAAG 205
Query 119 AGCCAATGTTTCAAAGGCTGAGCTTAAGGAGAAGTTGGCGAGGATGTACGAGGTTAAGGA 178
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 206 AGCCAATGTTTCAAAGGCTGAGCTTAAGGAGAAATTGGCGAGGATGTATGAGGTTAAGGA 265
Query 179 TCCGAATGCTATCTTCTGTTTCAAATTCAGAACTCACTTTGGAGGTGGTAAATCTTCTGG 238
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 266 CCCAAATGCTATCTTCTGTTTCAAGTTCAGAACTCACTTTGGAGGTGGTAAATCTTCTGG 325
Query 239 ATATGGTTTGATCTATGATTCTGTTGAGAACGCTAAGAAGTTCGAGCCTAAGTACAGACT 298
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 326 ATATGGTTTGATCTATGATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACT 385
Query 299 GATCAGGAACGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATTAAGGAGAGGAA 358
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 386 TATCAGGAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAA 445
Query 359 GAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGACCAAGGCTGGTGACCCCAAGAAGAA 418
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 446 GAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGACCAAGGCTGGTGATACCAAGAAGAA 505
Query 419 GTAAGATGTTTGAAGAGGACA 439
|||||| ||||||||||||||
Sbjct 506 GTAAGACGTTTGAAGAGGACA 526
> AT3G04920.1 | Symbols: | Ribosomal protein S24e family protein
| chr3:1360882-1362295 FORWARD LENGTH=739
Length=739
Score = 510 bits (276), Expect = 4e-144
Identities = 371/417 (89%), Gaps = 5/417 (1%)
Strand=Plus/Plus
Query 21 ATGGCGGAAAAAGCTGTCACAATCAGGACCA-GAAACTTCATGACCAACAGGCTTCTCGC 79
||||| ||||| || ||||| ||| | |||| |||| |||||||||||||| |||||| |
Sbjct 108 ATGGCTGAAAAGGCGGTCACCATCCGAACCAGGAAA-TTCATGACCAACAGACTTCTCTC 166
Query 80 CAGAAAGCAATTCGTTATTGATGTTCTTCATCCTGGAAGAGCCAATGTTTCAAAGGCTGA 139
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 167 CAGGAAGCAGTTCGTTATTGATGTTCTTCACCCTGGAAGAGCCAATGTTTCAAAGGCTGA 226
Query 140 GCTTAAGGAGAAGTTGGCGAGGATGTACGAGGTTAAGGATCCGAATGCTATCTTCTGT-T 198
||| ||||||||| | || |||||||||||||| |||||||| ||||| |||||| || |
Sbjct 227 GCTGAAGGAGAAGCTAGCAAGGATGTACGAGGTCAAGGATCCAAATGCAATCTTC-GTAT 285
Query 199 TCAAATTCAGAACTCACTTTGGAGGTGGTAAATCTTCTGGATATGGTTTGATCTATGATT 258
||||||||||||| |||||||||||||||||||| || || | ||||||||||||||||
Sbjct 286 TCAAATTCAGAACCCACTTTGGAGGTGGTAAATCATCCGGGTTTGGTTTGATCTATGATA 345
Query 259 CTGTTGAGAACGCTAAGAAGTTCGAGCCTAAGTACAGACTGATCAGGAACGGACTTGACA 318
||||||||| |||||||||||| || || || |||||||| |||||||| ||||||||||
Sbjct 346 CTGTTGAGAGCGCTAAGAAGTTTGAACCCAAATACAGACTTATCAGGAATGGACTTGACA 405
Query 319 CCAAGATTGAGAAATCAAGGAAACAGATTAAGGAGAGGAAGAACAGGGCGAAGAAAATCC 378
| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 406 CTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCC 465
Query 379 GTGGTGTTAAGAAGACCAAGGCTGGTGACCCCAAGAAGAAGTAAGATGTTTGAAGAG 435
|||||||||||||||| ||||||||||| |||||||||||| |||| | ||||||
Sbjct 466 GTGGTGTTAAGAAGACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCT-GAAGAG 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21011919082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5