BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942430

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27130.1 | Symbols: AGL39 | AGAMOUS-like 39 | chr5:9546547-9...   219    3e-56


> AT5G27130.1 | Symbols: AGL39 | AGAMOUS-like 39 | chr5:9546547-9547553 
FORWARD LENGTH=1007
Length=1007

 Score =  219 bits (118),  Expect = 3e-56
 Identities = 241/297 (81%), Gaps = 22/297 (7%)
 Strand=Plus/Plus

Query  99   TCTTTTGATCAGAATTCTTACTCAGCTCGAGATCAAACCTATGGAGAATCATCTTCACAA  158
            |||||||||||| | | ||||||  |||   |||| | || |||||||||||||||||||
Sbjct  702  TCTTTTGATCAGGACTGTTACTCCTCTCTCTATCAGATCTGTGGAGAATCATCTTCACAA  761

Query  159  GTTGCTTCTTTTGATCTAAACCCTAGCTCCGAGATCGGTGGTCTTCGATGTGAAACAGAG  218
            |||||||||||||||| |||||||||||||||||||   ||  ||   ||  ||||||||
Sbjct  762  GTTGCTTCTTTTGATCAAAACCCTAGCTCCGAGATCCAAGGA-TT---TG--AAACAGAG  815

Query  219  GAAGAGAATAACCAAATTAATCTACTAC-A-A-GAAATACAAACAGAGGCCA-TGGTCAA  274
            ||||||| ||||||||| |||||||||| | | |||| |||||||||||||| || ||||
Sbjct  816  GAAGAGATTAACCAAATCAATCTACTACTACAAGAAACACAAACAGAGGCCAATG-TCAA  874

Query  275  TTTGTATGGTGAGAG-T--TTTTGGGAT-AGTCTCTTCAAAGATGATAATGGGTTTGGTC  330
            |||| ||| |||||  |  |||||| || | ||| | ||| ||||||  ||  |||||||
Sbjct  875  TTTGGATGATGAGATCTGCTTTTGGAATGA-TCTATCCAACGATGATG-TG--TTTGGTC  930

Query  331  TAAACAGCGACTCCTGTCTCGACACCACCAATGACA-TGATCGACTTGGGAGAATTC  386
            |||||||| ||| | ||||||| | |||||||| || ||||| |||| ||||| |||
Sbjct  931  TAAACAGCTACTTCGGTCTCGATAACACCAATG-CAATGATCAACTTCGGAGA-TTC  985



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21665399819


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5