BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942435
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superf... 915 0.0
AT5G28160.1 | Symbols: | Galactose oxidase/kelch repeat superf... 872 0.0
AT4G39756.1 | Symbols: | Galactose oxidase/kelch repeat superf... 361 1e-98
> AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:10162783-10163943 FORWARD LENGTH=1059
Length=1059
Score = 915 bits (495), Expect = 0.0
Identities = 656/733 (89%), Gaps = 14/733 (2%)
Strand=Plus/Plus
Query 50 CGTTTTTGTCACTTCCTCATGAAATCGTCCTAAACTGTTTAGCTCGCATATCGAGATCGT 109
|||||||||| || ||| ||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 107 CGTTTTTGTCGCTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCGT 166
Query 110 ACTATCCGAAACTCTCCCTAGTCTGCAAGACATTTCGCACTCTCCTCATATCTAAAGAGC 169
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 167 ACTATCCGAAACTCTCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATATCTAACGAGC 226
Query 170 TCACCGTGGCGCGAGTGCACCTTAAAACCCACGAAACCTTTTTTCATGTCTGCTTACAGT 229
||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| |||
Sbjct 227 TCACCGTGGCGCGAGTGCAACTTAAAACCTACGAAAGTTTTTTTCATGTCTGCTTAAAGT 286
Query 230 TACCTGATAGACCTAATCCTTCAATGTTCACCCTCTGGATAAAACCTGGTCAAATCTTAA 289
| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TTCCTGATAAACCTAATCCATCAATGTTCACCCTCTGGATAAAACCTGGTCAAATCTTAA 346
Query 290 CCAACCAACTTGAGAAGAACGAGAGGTCTACCGGAGATACTCGGTTGGTACAAATACCTT 349
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 347 CCAACCAACTTGAGAAGAACGAGAGGTCTACAGGAGCTACTCGGTTGGTACAAATACCTT 406
Query 350 CTTCATATTATTCTAAAGTACCACCTTATGTCATTACTGTTGGTTCCGAA-TCGTACGGA 408
||||||||| ||||| ||||||| ||| | ||| |||||||||||||| | ||||||
Sbjct 407 CTTCATATTGTTCTATTGTACCACATTACCTAATTTCTGTTGGTTCCGAAGTA-TACGGA 465
Query 409 CTCAGCCA-CTGCAATGATCCGTCCTCCATCATGTGGGTTCGTAAGAAGG-GGACTTT-T 465
|||||||| | ||||||||||||||||| ||||| || ||||| |||| ||| ||| |
Sbjct 466 CTCAGCCAACA-CAATGATCCGTCCTCCAACATGTTTGTCCGTAACAAGGAGGA-TTTGT 523
Query 466 TGTTGGCGTAAAGCCCCAAACATGACTGTAGCTCGAGCCAAAGCCCTTGCGTGCGTCCT- 524
| |||| |||| |||||||||||||||||||||||||| |||||| | | | || |||
Sbjct 524 T-TTGGTGTAATGCCCCAAACATGACTGTAGCTCGAGCGAAAGCCATCGGGCACG-CCTA 581
Query 525 CAGTGGGAAAATATATGTCATGGGAGGTTGCAGGGCTGATGAACCCGTGAATTGGTGTGA 584
|| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 582 CAATGGGAAACTATATGTCATGGGAGGTTGCAGGGATGATGAATCCGTGAATTGGGGTGA 641
Query 585 GGTTTTCGACATAAAGTCTCAAACTTGGGAACCTTTACCTGACCCTGGCTCTGAGCTCCG 644
|||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 642 GGTTTTTGACCCAAAGACTCAAACTTGGGAAGCTTTACCTGACCCTGGCTCTGAGCTCCG 701
Query 645 TTTTTCTTCAATTAGAAAATTAGAGGTGTTCAAAGAAAAGCTTTACGTTAGAAGCAATGA 704
||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||| ||
Sbjct 702 TTTTTCTTCAATTAGAAAAATAGATGTGTTCCAAGAAAAGCTTTACGTTAGCAGCAACGA 761
Query 705 GGAGAAAGACTCTGTTTATGATCCAAAAGAAGGTAAATCGGA-TGTTTTAGAAAAACCAC 763
| ||| |||||||||||||||||||||||||||||||| ||| |||| ||||||| |||
Sbjct 762 GAAGATAGACTCTGTTTATGATCCAAAAGAAGGTAAAT-GGAATGTTGCAGAAAAATCAC 820
Query 764 ATGTG-AGATGTA 775
|||| | |||||
Sbjct 821 CTGTGCA-ATGTA 832
Score = 255 bits (138), Expect = 5e-67
Identities = 199/225 (88%), Gaps = 17/225 (8%)
Strand=Plus/Plus
Query 881 TGAATCTTGGTTGTGGAATGATTGAAATAGCTAACTATGGT-GAGAAACTCTTAATCTTA 939
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 833 TGAATCTTGGTTGTGGAATGATTGAAATAGCTAACTATGGTGGA-AAACTCTTAATCTTA 891
Query 940 TGGGACAAGTTTGTTCATCGTGGTACTTGTCAAGACAAAGATATTTGGTGTGCGGTGATT 999
||||||||| ||| || | | | | |||||||||||||||||||||||||||||||
Sbjct 892 TGGGACAAGGTTGGTC-T--T--T-C---TCAAGACAAAGATATTTGGTGTGCGGTGATT 942
Query 1000 GCGCTTGAAAAACGTGATGGTAGT-GATGAAGTTTGGGG-AAACATTGAGTGGGCT-GAT 1056
||||||||||||||||||||| || |||||||||||||| ||| |||||||||||| | |
Sbjct 943 GCGCTTGAAAAACGTGATGGT-GTTGATGAAGTTTGGGGGAAA-ATTGAGTGGGCTAG-T 999
Query 1057 ATTGTGATGACGGTTTCTAGCTCATACGTTTTCGTGAATAGTCTA 1101
|| ||| | |||||| | ||||||||||||||| || ||||||||
Sbjct 1000 ATCGTGCTTACGGTTCCAAGCTCATACGTTTTCTTGTATAGTCTA 1044
> AT5G28160.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:10137926-10139013 FORWARD LENGTH=975
Length=975
Score = 872 bits (472), Expect = 0.0
Identities = 641/721 (89%), Gaps = 18/721 (2%)
Strand=Plus/Plus
Query 25 ATGACTTCTGAATTCGCAA-GTCCATCGTTTTTGTCACTTCCTCATGAAATCGTCCTAAA 83
|||| ||||||| ||| || ||||||||||||||||||| ||| |||||||| || | |
Sbjct 1 ATGAATTCTGAAGTCG-AACGTCCATCGTTTTTGTCACTACCTGATGAAATCATCTTGAG 59
Query 84 CTGTTTAGCTCGCATATCGAGATCGTACTATCCGAAACTCTCCCTAGTCTGCAAGACATT 143
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 60 CTGTTTAGCCCGCATATCGAGATCGTACTATCCGAAACTCTCCCTAGTTTGCAAGACCTT 119
Query 144 TCGCACTCTCCTCATATCTAAAGAGCTCACCGTGGCGCGAGTGCACCTTAAAACCCACGA 203
|||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||| ||
Sbjct 120 CCGCACTCTCCTCATATCTAATGAGCTCATTGTGGCGCGATTGCACCTCAAAACCCATGA 179
Query 204 AACCTTTTTTCATGTCTGCTTACAGTTACCTGATAGACCTAATCCTTCAATGTTCACCCT 263
|||||||| ||||||||||||| |||| ||||||| ||||||||| ||||||||||||||
Sbjct 180 AACCTTTTGTCATGTCTGCTTAAAGTTTCCTGATAAACCTAATCCGTCAATGTTCACCCT 239
Query 264 CTGGATAAAACCTGGTCA-AATCTTAACCAACCAACTTGAGAAGAACGAGAGGTCTACCG 322
|||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||
Sbjct 240 CTGGATAAAACCTGGT-ACAATCTTAACCAACCAACTTGAGAAGAACAAGAGGTCTACAA 298
Query 323 GAGATACTCGGTTGGTACAAATACCTTCTTCATATTATTCTAAAGTACCACCTTATGTCA 382
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||
Sbjct 299 GAGATACTCGGTTGGTACAAATACCTTCTTCATATTATTATAATGTACCGTTTTACCTCG 358
Query 383 TTACTG-TTGGTTCCGAA-TCGTACGGACTCAGCCA-CTGCAATGATCCGTCCTCCATCA 439
||| || ||||||||||| | |||||||||||||| | |||||||||||||||||| ||
Sbjct 359 TTA-TGGTTGGTTCCGAAGTA-TACGGACTCAGCCAAC-GCAATGATCCGTCCTCCAACA 415
Query 440 TGTGGGTTCGTAAGAAGGGG-AC-TTTTTGTTGGCGTAAAGCCCCAAACATGACTGTAGC 497
||| || ||||| |||||| | ||||| ||| |||||||||||||||||||||||||
Sbjct 416 TGTTTGTCCGTAATAAGGGGGATATTTTT-TTGT-GTAAAGCCCCAAACATGACTGTAGC 473
Query 498 TCGAGCCAAAGCCCTTGC-GTGCGTCCTCAGTGGGAAAATATATGTCATGGGAGGTTGCA 556
|||||| |||||| ||| || ||| ||| ||||||||||||||| |||||||||||||
Sbjct 474 TCGAGCTAAAGCCAGTGCAGTT-GTCTTCAATGGGAAAATATATGTGATGGGAGGTTGCA 532
Query 557 GGGCTGATGAACCCGTGAATTGGTGTGAGGTTTTCGACATAAAGTCTCAAACTTGGGAAC 616
|||||||||| ||||||||||| |||| ||||| ||||||||| ||||||||||||||
Sbjct 533 TGGCTGATGAATCCGTGAATTGGGGTGAAGTTTTTGACATAAAGACTCAAACTTGGGAAG 592
Query 617 CTTTACCTGACCCTGGCTC-TGAGCTCCGTTTTTCTTCAATTAGAAAATTAGAGGTGTTC 675
|||||||||||||||| || |||| ||||||||||||||||||||||| |||| ||||||
Sbjct 593 CTTTACCTGACCCTGG-TCCTGAGTTCCGTTTTTCTTCAATTAGAAAAATAGATGTGTTC 651
Query 676 AAAGAAAAGCTTTACGTTAGAAGCAATGAGGAGAAAGACTCTGTTTATGATCCAAAAGAA 735
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 652 CAAGAAAAGCTTTACGTTAGAAGCAACGAGAAGAAAGACTCTGTTTATGATCCAAAAGAA 711
Query 736 G 736
|
Sbjct 712 G 712
Score = 302 bits (163), Expect = 6e-81
Identities = 231/262 (88%), Gaps = 11/262 (4%)
Strand=Plus/Plus
Query 842 AAGAATGTAGACTGGTCAGAGGTTTAGATATGTTGAACCTGAATCTTGGTTGTGGAATGA 901
||||||| ||| |||||| ||||||||| ||||||||| ||||||||||||||| | ||
Sbjct 710 AAGAATGGAGAGTGGTCAAAGGTTTAGACATGTTGAACAGGAATCTTGGTTGTGGTACGA 769
Query 902 TTGAAATAGCTAACTATGG-TGAGAAACTCTTAATCTTATGGGACAAGTTTGTTCATCGT 960
||||||| | | ||||||| || |||||||||||||||||||||||| || |||
Sbjct 770 TTGAAATTGTTCACTATGGCGGA-AAACTCTTAATCTTATGGGACAAG---GTAGATC-- 823
Query 961 GGTACTTGTCAAGACAAAGATATTTGGTGTGCGGTGATTGCGCTTGAAAAACGTGATGGT 1020
| || ||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 824 --T--TTCTCATGACAAAGATATTTGGTGTGCGGTGATTGCGCTTGAAAAACGTCATGGT 879
Query 1021 AGTGATGAAGTTTGGGGAAACATTGAGTGGGCTGATATTGTGATGACGGTTTCTAGCTCA 1080
|||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 880 AGTGATGAAGTTTGGGGAAACATTGAATGGGCTGATATTGTGCTGACGGTTCCTAGCTCA 939
Query 1081 TACGTTTTCGTGAATAGTCTAG 1102
||||||||||||||||||||||
Sbjct 940 TACGTTTTCGTGAATAGTCTAG 961
> AT4G39756.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18441756-18443000 FORWARD LENGTH=1195
Length=1195
Score = 361 bits (195), Expect = 1e-98
Identities = 803/1087 (74%), Gaps = 79/1087 (7%)
Strand=Plus/Plus
Query 44 GTCCATCGTTTTTGTCACTTCCTCATGAAATCGTCCTAAACTGTTTAGCTCGCATATCGA 103
|||| ||||||||||| |||||| | |||||| | ||||||||||||| |||||| |||
Sbjct 50 GTCCGTCGTTTTTGTCCCTTCCTGAAGAAATCCTTGTAAACTGTTTAGCCCGCATACCGA 109
Query 104 GATCGTACTATCCGAAACTCTCCCTAGTCTGCAAGACATTTC-GCACTCTCCTCATATCT 162
||||||||| |||||||||||| |||||||||||| ||| || ||||| || ||||
Sbjct 110 AATCGTACTACCCGAAACTCTCCTTAGTCTGCAAGA-GCTTCTGCTCTCTCATCTTATCC 168
Query 163 AAAGAGC-TCACCGTGGCGCGAGTGCACCTTAAAACCCACGAA-ACCTTTTTTCATGTCT 220
| || | | | ||||| |||| || ||||| || || ||| | | | |||| ||||
Sbjct 169 ATGGAACTTTA-CGTGGAGCGATTGTACCTTGGTACACATGAAGA-CGTCCTTCACGTCT 226
Query 221 GCTTACAGTTACCTGATAGACCTAATCCTTCAAT-GTTCACCCTCTGGA-TAAAACCTGG 278
|||||||||| || ||| | | | |||||| || ||| | ||||||| | ||||| ||
Sbjct 227 GCTTACAGTTGCCCGATCGTCGTCTTCCTTC-ATGGTTTAGTCTCTGGACT-AAACC-GG 283
Query 279 -TCAAATCTTAACCAACCAAC-TTGAGAAGAACG-AGAGGTCTACCGGAGATACTCGGTT 335
||||| | ||||||| | || ||| |||||| | | | ||| || || ||||| |||
Sbjct 284 ATCAAACCCTAACCAA-CGACATTGGGAAGAA-GAAAAAGTCCACTAGAAATACTTTGTT 341
Query 336 GGTACAAATACCTTCTTCATATTATTCTAAAGTACCACCTTATG-TCATTACT--G-TTG 391
||||| |||||||||||| |||| | || |||||| ||| |||| | | |||
Sbjct 342 GGTACCAATACCTTCTTCTTATTCTCCTCGTGTACCA----ATGTTCATCGGTGAGATTG 397
Query 392 GTTCCGAATCGTACG-GACTCAGC-CACTGCAATGA-TCCGTCCTCCATCATGTGGGTTC 448
|||| |||| |||| | | ||| || ||| | ||| |||||| ||||||||||||
Sbjct 398 GTTCAGAATTATACGCTA-TTAGCAAAC-ATAAT-ACTCCATCCTCCGTCATGTGGGTTC 454
Query 449 GTAAGAAGGGGACT-TTT-TG-TTGGCGTAAAGCCCCAAACATGACTGTAGCTCGAGCCA 505
|| | ||| | | ||| || |||||||||||||| | ||||| |||||||| ||||
Sbjct 455 GTGATAAGACTAGTATTTATGCCTGGCGTAAAGCCCCTAGTATGACAGTAGCTCGTGCCA 514
Query 506 AAGCCCTTGCGTGCGTCCTCAGTGGGAAAATATATGTCATGGGAGGTTGCAG-GGCTGAT 564
| | |||| | ||| ||| |||||||||||| || ||||||||||| | || |||
Sbjct 515 ATGTTTTTGCTTATGTCATCAATGGGAAAATATACGTAATGGGAGGTTG-TGCCGCAGAT 573
Query 565 GAACCCGTGAATTGGTG-TGAGGTTTTCGACATAAAGTCTCAAACTTGGGAACCTTTACC 623
||| | | ||||| | |||||| |||||| |||| ||||||||||| |||||||| |
Sbjct 574 GAATCTAAGTATTGG-GCTGAGGTATTCGACCCAAAGACTCAAACTTGGAAACCTTTAAC 632
Query 624 TGACCCTGGCTCTGAGCTCCGTTTTTCTTCAATTAGAAAAT-TAGAGGTGTTCAAAGAAA 682
|||||| || | ||| | || | |||||||||| | | | | |||| | ||| ||
Sbjct 633 TGACCCGGGGGCCGAGTTACGCGTATCTTCAATTA-TAGGTATGGCGGTGAGCGAAGGAA 691
Query 683 AGCTTTACGTT-AGAAGCA-ATGAGGAGAAAGACT-CTGTTTATGATCCAAAAGAAGGTA 739
|| |||| ||| |||| || | | | ||| |||| | ||||||||||| |||||| ||
Sbjct 692 AGATTTATGTTAAGAA-CAGCT-ATGTGAAGGACTAC-GTTTATGATCCGGAAGAAGATA 748
Query 740 AATCGGATGT-TTTAGAAAAAC-CA--CATG--TGAGATGTACAA---T-A-ATAGAGAA 788
||| ||| || || | || | || |||| ||||| | | || | | ||||||||
Sbjct 749 AATGGGACGTAGTT-G-CAAGCTCATTCATGATTGAGA-G-A-AAGTGTGAGATAGAGAA 803
Query 789 TGT-TGTGTATTGTTATAATAAACAGAGCTGCTGGTGGTATGACACAAATCGCAAAGAAT 847
||| | |||| ||| || || ||| || || | ||||||||||||||| | |||||||
Sbjct 804 TGTAT-TGTACCGTTTTAGTAGACAAAGTTGTTCGTGGTATGACACAAAGCATAAAGAAT 862
Query 848 GTAGA-CTGGTC-AGAGGTTTAGATATGTTGAACCTGAATCTTGGTTGTGGAATGATTGA 905
| ||| | || || ||||| | || ||||| | || | ||| | | || ||||
Sbjct 863 GGAGAGAT-ATCAAG-GGTTTGGCTACATTGAATAGGCGTCGTCGTTCTAGTATTCTTGA 920
Query 906 AATAGCTAACTATGGTGAGAAACTCTTAATCTTATGGGACAA-GTTTGTTCATCGTGGTA 964
| |||| || || ||||| ||| |||||||||| ||||| || |||| | | | |
Sbjct 921 AGTAGCGAAGTACGGTGACAAAGTCTTAATCTTGTGGGA-AATCTTTGCGAAGCCT--T- 976
Query 965 CTTGTCAAGACAAAGA-TATTTGGTGTGCGGTGATTGCGCTTGAAAAACGTGATGGTAGT 1023
|| |||| || |||| |||||||||||||||||||||||||||||| ||| | | |
Sbjct 977 TTTATCAAAAC-AAGAGTATTTGGTGTGCGGTGATTGCGCTTGAAAAGCGTAAAA-T--T 1032
Query 1024 GATGAAGTTTGGGGAAACATTGAGTGGGCT-GATATTGTGATGACGGTTTCTAGCTCATA 1082
|||||| |||||||||| || |||||||| | ||||||| | |||||| |||| |||||
Sbjct 1033 GATGAAATTTGGGGAAAGGTTAAGTGGGCTAG-TATTGTGCTTACGGTTCCTAGATCATA 1091
Query 1083 CGTTTTC 1089
||||||
Sbjct 1092 TGTTTTC 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55722604950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5