BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942438 Length=1872 Score E Sequences producing significant alignments: (Bits) Value AT5G28210.1 | Symbols: | mRNA capping enzyme family protein | ... 2337 0.0 AT5G01290.1 | Symbols: | mRNA capping enzyme family protein | ... 769 0.0 > AT5G28210.1 | Symbols: | mRNA capping enzyme family protein | chr5:10188586-10190463 FORWARD LENGTH=1878 Length=1878 Score = 2337 bits (1265), Expect = 0.0 Identities = 1661/1845 (90%), Gaps = 56/1845 (3%) Strand=Plus/Plus Query 39 GACATCTCGAAGACCGAATC-GA-AACTTATGAAGAACAGAGCAAAAGATTGAGACAAAC 96 |||||||||||||||||| | || ||| ||||||||| |||||||||||||||| ||| Sbjct 59 GACATCTCGAAGACCGAA-CTGAGAAC-CGTGAAGAACATAGCAAAAGATTGAGACCAAC 116 Query 97 AAGTTTCCGTGATCAGAACGTAACCATCCCTCAAGGTTGGTTAGATTGTCCTCGCTTTGG 156 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 117 AAGTTTCCGTGATCAGAAGGTAACCATCCCTCAAGGTTGGTTAGATTGTCCTCGCTTTGG 176 Query 157 TCAAGATATTGGATTCATCATTCCTTCAAAAGTTCCTCTCAGTGAATCGTACAATGATTG 216 |||| |||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||| Sbjct 177 TCAACATATTGGATTAATCATTCCTTCGAAAGTTCCTCTCAGTGAATCTTACAACGATTG 236 Query 217 TGTTCCTTCTGGCAAAAGATACAATTTCAAAGAGTGGTTCACTAGTGGAAGGACGAGGCT 276 ||||||||||||||||||||||||||||||| ||||||| | | | | | || | Sbjct 237 TGTTCCTTCTGGCAAAAGATACAATTTCAAACAGTGGTT-A--ACT---A--A-GA---T 284 Query 277 TGGTCTTGTGATTGATCTTACCAATACAACTCGTTACTATCATCCTAACACCGAGTTAAG 336 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 285 TGGTCTTGTGATTGATCTGACTAATACAACTCGTTACTATCATCCTAACACCGAGTTAAG 344 Query 337 ACATAACGGTATCAAGTATGTTAAGATTCGTTGCAGTGGTCGTGATGCTGTGCCGGATAA 396 ||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 345 ACAGAACCGTATCGAGTATGTTAAGATTCGTTGCAGTGGTCGTGATTCTGTGCCGGATAA 404 Query 397 TGTGTCGGTAAACACATTTGTTTACGAGGTTAATCAGTTCGAG-A--ATAACTTCTCACA 453 |||||| ||||||||||||||| ||||||||| |||||||||| | ||||||| || | Sbjct 405 TGTGTCTGTAAACACATTTGTTCACGAGGTTACTCAGTTCGAGAATCATAACTTGTCGGA 464 Query 454 GAAGTATGTTCTTGTGCATTGTACTCACGGACATAATCGTACAGGGTTTATGATTGTTCA 513 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 465 GAAGTATCTTCTTGTGCATTGTACTCACGGACATAATCGTACAGGGTTTATGATTGTTCA 524 Query 514 TTACCTTATGCGGTCTAGACCGATGATGAGTGTTACAGAAGCCTTGAAAATGTTTTCCGA 573 ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| || Sbjct 525 TTACCTTATGCGGTCTAGACCGATGATGAGTGTTACACAAGCCTTGAAAATATTTTCGGA 584 Query 574 TGCTCGCCCGCCTGGG-ATCTATAAACCCGATTACATTGATGCTCTATACAGTTTTTATC 632 |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 585 TGCTCGCCCGCC-GGGTATCTATAAACCCGATTACATTGATGCTCTATACAGATTTTATC 643 Query 633 ATGAAGTTAAACCTGAGAGTGTTATATGTCCACCAACTCCTGAATGGAAGAGGTCTGAAG 692 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 644 ATGAGGTTAAACCTGGGAGTGTTATATGTCCACCAACTCCTGAATGGAAGAGGTCTGAAG 703 Query 693 AAGTTAAAGTCGACGATGATGATGATGCTCTGTCTTACCCTGTAG-TGCAAGGAAACAAT 751 ||| |||| |||||||||||||| ||||||||||||||| || || | |||||||||||| Sbjct 704 AAGCTAAATTCGACGATGATGATAATGCTCTGTCTTACCGTG-AGGTACAAGGAAACAAT 762 Query 752 CAGGAGGAGAATGTGAAGAAGTTGTCGAATGATGATATTTTGGGGGATGACATACCCTAT 811 ||||||||||||||| || ||||| ||||||||| ||||||||||||| ||||||||| Sbjct 763 CAGGAGGAGAATGTGCAG---TTGTCTAATGATGATGTTTTGGGGGATGAAATACCCTAT 819 Query 812 GGTCAAGAGGTTTCTTACCAGCAATT-AATTAATGATATGCTGAATATTTCTATGCAGTT 870 | ||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||| Sbjct 820 GATCAAGAGGTGTCTTACCAG-AATTCAATTAATCATATGCTGAATATTTCTATGCAGTT 878 Query 871 CCCTGGCTCGCACCCTGTATCGTTAGGCAGGGAGGCATTGCAACTCTTGAGGCAGA-GGT 929 |||||||||||||||| |||| ||||| || ||||||||||||||||||||||| | ||| Sbjct 879 CCCTGGCTCGCACCCTCTATCATTAGGTAGAGAGGCATTGCAACTCTTGAGGCA-ACGGT 937 Query 930 ACTATTACGCGACATGGAAGGCAGATGGAACGCGGTATATGATGCTCTTGACTAGAGATG 989 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 938 ACTATTACGCGACATGGAAGGCAGATGGAACGCGGTACATGATGCTCTTGACTAGAGATG 997 Query 990 GGTGTTATCTGGTTAATAGAGAGTTTAGATTTAGAAGGGTACAAATGCGGTTCCCTTGTA 1049 | |||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||| Sbjct 998 GATGTTATCTGGTTAATAGAGAGTATAGGTTTAGAAGAGTACAAATGCGTTTCCCTTGTG 1057 Query 1050 AGTACGACCCGAGTGATTATAAAGTGCATCATTACACATTGCTTGATGGAGAGATGGTTA 1109 ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1058 AGTACGAGCCAAGTGATTATAAAGTGCATCATTACACATTGCTTGATGGAGAGATGGTTG 1117 Query 1110 TAGACACATTTGAGGTGGGAGGAAGGCGGTGTCAGGCGAGGAGGTACCTCGTGTATGATT 1169 |||||||| || ||| |||| || || | | || | |||||||||||||||||| |||| Sbjct 1118 TAGACACAATTAAGGAAGGAGAAACGCAGCGCCATGTGAGGAGGTACCTCGTGTACGATT 1177 Query 1170 TGGTAGCGATTAATGGGCAATCAGTGGCAGAGCGGCCTTTTAGTGAAAGATGGAATATTC 1229 |||||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 1178 TGGTAGCGATCAACGGGCAATTTGTGGCAGAGAGGCCTTTTAGTGAAAGATGGAATATTC 1237 Query 1230 TTGAGAGAGAGGTGATCAGACCGCGTAACGATGAGAAGAAGGTTATGAATCATTGGTATA 1289 ||||||||||| |||||| ||||||||| || ||||||||||||| | |||||||||||| Sbjct 1238 TTGAGAGAGAGCTGATCAAACCGCGTAATGACGAGAAGAAGGTTAGGGATCATTGGTATA 1297 Query 1290 GATACGAGATGGAGCCTTTTGGGGTACGGATCAA-GCCTTTTTGTTTACTCTCTGCTGTG 1348 |||| || | |||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct 1298 GATATGATAAGGAGCCTTTTGGTGTACGGATCAAAGC-TTTTTGTTTACTCTCTGCTGTG 1356 Query 1349 GAGAAGA---TTC-CA-T---------C----GCTTTCGCATGAAACAGACGGTCTAATA 1390 ||||||| || || | | |||||| |||||| ||||||| |||||| Sbjct 1357 GAGAAGAAGGTTTTCAATGAGTTGATTCCACTGCTTTCACATGAATCAGACGGACTAATA 1416 Query 1391 TTTCAAGGGTGGGACGATCCTTATGTTTTCGGAACGGACCACGGTCTATTGAAATGGAAG 1450 |||||||| |||||| ||||||||||||||||| | || | | |||| |||| |||||| Sbjct 1417 TTTCAAGGTTGGGACAATCCTTATGTTTTCGGACCCAACAAAGATCTACTGAAGTGGAAG 1476 Query 1451 TTTGTGGAAACACTTGATTTTCTGTTTGACATGGACAAGTATGGGCGTCAAATGCTCTTC 1510 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1477 TTTGTGGAAACACTTGATTTTCTGTTTGATATGGACAAGTATGGACGTCAAATGCTCTTC 1536 Query 1511 TTGCAAGAACGTGGGAAGATGAAGCTTATGGAAGGCTATT-CCGTTGAATTTAGAGGTGA 1569 |||||||||||||||| |||||||||||||||||||| || ||||||| ||||||||||| Sbjct 1537 TTGCAAGAACGTGGGAGGATGAAGCTTATGGAAGGCT-TTGCCGTTGAGTTTAGAGGTGA 1595 Query 1570 TGGTTGGGACAATAACCCGGCCAGTTACTGTGGAAAGATTGTAGAGTGTTCATGGGATAA 1629 ||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1596 TGGTTGGGACAATGACCTGGCTAGTTACTGTGGAAAGATTGTGGAGTGTTCATGGGATAA 1655 Query 1630 GGAGAAGAAAGTATGGGTTAGTTTGCGGATCAGAGTTGATAAATCTAAACCGAATGGTAT 1689 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1656 GGAGAAGAAAGTATGGGTTAGTTTGCGGATTAGAGTTGATAAATCGAAACCGAATGGTAT 1715 Query 1690 TGGAACCGGTCATAGCGTGATAAAGTGCATA-AAGGATGACATCACGAAGGACGTTTTGC 1748 || ||||||| ||||||||||||||||||| ||| ||||| | ||||| || ||||||| Sbjct 1716 CGGGACCGGTCGTAGCGTGATAAAGTGCATAGAAG-ATGACTTAACGAAAGAGGTTTTGC 1774 Query 1749 TGGAGGAGATCAAAAAGATTACCCGTCTTCCAATGTACGTTGATCGCATTCGAAGG-GAT 1807 || ||||||||||| |||||| || ||| || ||||||||||| ||||| |||| ||| Sbjct 1775 TGAAGGAGATCAAAGAGATTATCCTTCTACCGATGTACGTTGAGCGCAT-CGAAAATGAT 1833 Query 1808 ACACAAGAAGCTGAACGCCGCAAGCATGGAAACCGTAAAGGGTAA 1852 ||| ||||||||| ||| ||||||||||||||||||||||| ||| Sbjct 1834 ACAAAAGAAGCTGCACGTCGCAAGCATGGAAACCGTAAAGGCTAA 1878 > AT5G01290.1 | Symbols: | mRNA capping enzyme family protein | chr5:117307-121569 FORWARD LENGTH=2364 Length=2364 Score = 769 bits (416), Expect = 0.0 Identities = 1364/1794 (76%), Gaps = 175/1794 (10%) Strand=Plus/Plus Query 125 CCTCAAGGTTGGTTAGATTGTCCTCGCTTTGGTCAAGATATTGGAT-TCATCATTCCTTC 183 ||||| |||||| ||||||||||| | ||||||| || || |||| | || |||||||| Sbjct 424 CCTCAGGGTTGGCTAGATTGTCCTGGTTTTGGTCTGGAGATAGGATGT-ATTATTCCTTC 482 Query 184 AAAAGTTCCTCTCAGTGAATCGTACAATGATTGTGTTCCTTCTGGCAAAAGATACAATTT 243 || ||||| || |||||||| ||||| || ||||||| |||| ||||||||| ||| Sbjct 483 TAAGGTTCCACTTAGTGAATCTTACAACGAACATGTTCCTCCTGGTAAAAGATACTCTTT 542 Query 244 CAAAGA-GTGGTTC---ACTAGTG---GAA-GGACG-AGGCTTGGTCTTGTGATTGATCT 294 |||| | ||||||| || || | || ||| | | |||||||| || |||||||| Sbjct 543 CAAACAGGTGGTTCGTAACCAGAGAATTAATGGAAGAAAACTTGGTCTAGTCATTGATCT 602 Query 295 TACCAATACAACTCGTTACTATCATCCTAACA-CCGAGTT-AAGACATAACGGTATCAAG 352 ||| ||||||||||||||||| | ||| ||| || || |||| | | || |||||| Sbjct 603 TACTAATACAACTCGTTACTA-C--CCT-ACATTAGACTTAAAGA-AGGATGGCATCAAG 657 Query 353 TATGTTAAGATTCG-TTGCAGTGGTCGTGATGCTGTGCCGGATAATGTGTCGGTAAACAC 411 ||||||||||| | ||||| ||||||||||||||||| |||||||| || |||||||| Sbjct 658 CATGTTAAGATT-GCATGCAGGGGTCGTGATGCTGTGCCTGATAATGTCTCTGTAAACAC 716 Query 412 ATTTGTTTACGAGGTTAAT-CAGTTCG------A-GAATAACTTCTCACAGAAGTATGTT 463 ||||| |||||||| | ||||||| | || ||| | || |||||||||| Sbjct 717 CTTTGTCAACGAGGTT-CTGCAGTTCGTCCTTAATCAAAAAC-ACGCAAAGAAGTATGTC 774 Query 464 CTTGTGCATTGTACTCACGGACATAATCGTACAGGGTTTATGATTGTTCATTACCTTATG 523 || || || ||||| || || |||||||| |||||||| ||||| |||||||| || ||| Sbjct 775 CTCGTCCACTGTACACATGGGCATAATCGGACAGGGTTCATGATAGTTCATTATCTCATG 834 Query 524 CGGTCTA-GACCGATGATGAGTGTTACAGAAGCCTTGAAAATGTTTTCCGATGCTCGCCC 582 || |||| | || | ||||| |||||| | || ||||| ||||||| ||||| ||||| Sbjct 835 CGCTCTATG-CCAACGATGAACGTTACACAGGCATTGAAGTTGTTTTCTGATGCCCGCCC 893 Query 583 GCCTGGGATCTATAAACCCGATTACATTGATGCTCTATACAGTTTTTATCATGAAGTTAA 642 |||||||| |||||||| ||||| ||||||||| |||||| ||||||||| ||| ||| Sbjct 894 ACCTGGGATTTATAAACCAGATTATATTGATGCTTTATACACTTTTTATCACGAA-ATAA 952 Query 643 A-CCTGAGAGTGTTA-TATGTCCACCAACTCCTGAATGGAAGAGGTCTGAAGAA---G-T 696 | ||||| ||||||| | || |||||||||||||||||||||||||||| || | | Sbjct 953 AGCCTGAAAGTGTTACT-TGCCCACCAACTCCTGAATGGAAGAGGTCTGCCGAGCTTGAT 1011 Query 697 -T-AA-----A-G-T---C--GACGATGATGATGATGCT-CT--GTCTTACCCTGTAGTG 739 | || | | | | || ||||||||||||| | || | || ||||||| | Sbjct 1012 CTTAATGGTGAAGCTGTTCAAGATGATGATGATGATGATTCTCCGCCTGACCCTGT--T- 1068 Query 740 CAAGGAAA-CAATCAGGAGGAGAATGTGAAGAAGTTGTCGAATGATGATATTTTGGGGGA 798 |||| ||| |||||||||| | | |||||||| | ||| |||||||| | |||||| || Sbjct 1069 CAAG-AAATCAATCAGGAG-A-A-TGTGAAGA--T-GTCAAATGATGACACTTTGGGTGA 1121 Query 799 TGACATACCCTATGGTCAAGAGGTTTCTTACCAGCAATT-----A-A---T--TAATGAT 847 ||| |||||| || ||| |||| |||||| |||||| | | | | ||||| Sbjct 1122 TGAAATACCCCATTATCAGGAGGAAGCTTACCGGCAATTCTGTTATAAAATGCTTATGAT 1181 Query 848 -A-TGCTG----AATAT--TTCTATGCAGTTCCCTGGCTCGCACCCTGTATCGTTAGGCA 899 | || || || | || |||||| ||||| || |||||||||||||| |||| || Sbjct 1182 GAATGTTGGGGGAAGAGGATT-TATGCAATTCCCAGGTTCGCACCCTGTATCATTAGACA 1240 Query 900 GGGAG-GCATTGCAACTCTTGAGGCAGAGGTACTATTACGCGACATGGAAGGCAGATGGA 958 ||||| | |||||||| ||||||||| | |||||||| ||||||||||||||||||||| Sbjct 1241 GGGAGAGT-TTGCAACTTTTGAGGCAGCGATACTATTATGCGACATGGAAGGCAGATGGA 1299 Query 959 ACGCGGTATATGATGCTCTTGACTAGAGATGGGTGTTATCTGGTTA-ATAGAGAG-TTTA 1016 || || |||||||||||||| |||| ||||||||| ||| || | | |||| ||| |||| Sbjct 1300 ACACGTTATATGATGCTCTTAACTATAGATGGGTGCTATTTGAT-AGATAG-GAGCTTTA 1357 Query 1017 -GATTTAGAAGGGTACAAATGCGGTT-CCCTTGTAAGTACG-ACCCGAGTGA-TT----A 1068 | ||| | |||||||| ||||| || |||| ||||| || || ||| || || | Sbjct 1358 AG-TTTCGGAGGGTACAGATGCGTTTTCCCT-GTAAGCACTCACGTGAGGGAATTTCTGA 1415 Query 1069 TAAAGTGCATCATTACACATTGCTTGATGGAGAGATGGTTATAGACACATTTGA--GGTG 1126 |||||||||||| ||||| |||||||||||||||||||| ||||| || || |||| Sbjct 1416 TAAAGTGCATCACTACACTTTGCTTGATGGAGAGATGGTCATAGATACCCC-GACAGGTG 1474 Query 1127 GGAGGAAGGCGGTGTCAGGCGAGGAGGTACCTCGTGTATGATTTGGTAGCGATTAATGG- 1185 || |||| || | || | ||||||||| ||||| |||||| ||||||| || ||||| Sbjct 1475 --AGCAAGG-GGAGGCAAG-GAGGAGGTATCTCGTATATGATATGGTAGCAATCAATGGT 1530 Query 1186 GCAATCAGTGGCAGAGCGGCCTTT-TAGTGAAAGATGGAATATTCTT-GAGAGAGAGGTG 1243 | ||||||| | ||||||| |||| | ||||||||||||| || || | | | |||||| Sbjct 1531 G-AATCAGTTGTAGAGCGGACTTTCT-GTGAAAGATGGAACATG-TTCGTGCGTGAGGTG 1587 Query 1244 ATCAGACCGCGTAAC-GATGAGAAGAAGGTTATGAA-TCATTGGTATAGATACGAGATGG 1301 ||| |||| || | | | ||||||| | | ||| |||||| || ||||| || | | Sbjct 1588 ATCGGACCTCG-AGCAGCTGAGAAGC---TCA-GAAGTCATTGCTACAGATATGACCTTG 1642 Query 1302 AGCCTTTTGGGGTACGGATCAAGCCTTTTTGTTTACTCTCTGCTGT-G-GA-G------A 1352 ||||||||| ||||||||| ||| ||| || ||||| ||| |||| | || | | Sbjct 1643 AGCCTTTTGCGGTACGGATGAAGGGTTTCTGGTTACTTTCTACTGTTGAGAAGCTGTTGA 1702 Query 1353 AGA-T----T-CCATCGCTTTCGCATGAAACAGACGGTCT-AATATTTCAAGGGT-GGGA 1404 ||| | | |||||||||||||||||| |||| || || ||||||||| |||| |||| Sbjct 1703 AGAATACCATTCCATCGCTTTCGCATGAAGCAGATGG-CTTAATATTTCA-GGGTTGGGA 1760 Query 1405 CGATCCTTATGTTTT-CGGAACGGACCACGGTCTATTGAAATGGAAGTTTGTGGAAAC-A 1462 ||||| |||||| || ||| | | |||||| |||| ||||||| || |||| | Sbjct 1761 TGATCCGTATGTTCCACG-AACCCATAAAGGTCTACTGAAGTGGAAGTATGCAGAAATGA 1819 Query 1463 -CT---T-GATTTTCTGTTTGACATGG---AC-AAGTATGGGCGTCAAATGCTCTTCTTG 1513 || | || ||||||| ||| |||| | ||| | |||||| | ||||||||| Sbjct 1820 ACTCAGTAGACTTTCTGTATGAGATGGGTGAGGAAG-AGGGGCGTGGTTTCCTCTTCTTG 1878 Query 1514 CAAGAACGTGGGAAGATGAAGCTTATGGAAGGCTATTCCGTTGAATTTAGAGGTGATGGT 1573 || ||| | ||||||| |||||||||||||| ||||| ||||| ||||||| |||| | Sbjct 1879 CATGAAAGAGGGAAGAAAAAGCTTATGGAAGGATATTCAGTTGAGTTTAGAGATGAT--T 1936 Query 1574 TGGGACAATAACCCGGCCAGTTACTGTGGAAAGATTGTAGAGTGTTCATGGGATAAGGAG 1633 || || || | | |||||| ||| ||||||||||| ||| | ||||||||||| Sbjct 1937 CGG-AC-----CC-GTCAAGTTACAATGGGAAGATTGTAGAATGTGCTTGGGATAAGGAT 1989 Query 1634 AAGAAAGTATGGGTTAGTTTGCGGATCAGAGTTGATAAATCTAAACCGAATGGTATTGGA 1693 |||||||| ||| |||| || ||||||||||||| ||| ||| ||| |||| ||| | Sbjct 1990 AAGAAAGTTTGGTTTAGCATGAGGATCAGAGTTGACAAAACTACACCAAATGATATC--A 2047 Query 1694 AC-CGG-TCATA-GCGTGATAAAGTGCATAAAGGATGACATCAC-GAAGGACGTTTTGCT 1749 || | | || || | ||||||||| ||||||| ||| ||||||| || ||| |||||||| Sbjct 2048 ACACTGCTCGTAAG-GTGATAAAGAGCATAAATGATAACATCACTGA-GGAGGTTTTGCT 2105 Query 1750 GGAGGAGATCAAAA-AGATTACCCGTCTTCCAATGTACGTTGATCGCATTCGAA 1802 |||| || || | |||| | ||||| |||||||||| ||| |||||||||| Sbjct 2106 TCAGGAAAT-AAGAGAGATCATTCGTCTCCCAATGTACGCTGACCGCATTCGAA 2158 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92670206070 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5